Skip to main content

Main menu

  • Home
  • Articles
    • Current
    • Special Feature Articles - Most Recent
    • Special Features
    • Colloquia
    • Collected Articles
    • PNAS Classics
    • List of Issues
  • Front Matter
    • Front Matter Portal
    • Journal Club
  • News
    • For the Press
    • This Week In PNAS
    • PNAS in the News
  • Podcasts
  • Authors
    • Information for Authors
    • Editorial and Journal Policies
    • Submission Procedures
    • Fees and Licenses
  • Submit
  • Submit
  • About
    • Editorial Board
    • PNAS Staff
    • FAQ
    • Accessibility Statement
    • Rights and Permissions
    • Site Map
  • Contact
  • Journal Club
  • Subscribe
    • Subscription Rates
    • Subscriptions FAQ
    • Open Access
    • Recommend PNAS to Your Librarian

User menu

  • Log in
  • My Cart

Search

  • Advanced search
Home
Home
  • Log in
  • My Cart

Advanced Search

  • Home
  • Articles
    • Current
    • Special Feature Articles - Most Recent
    • Special Features
    • Colloquia
    • Collected Articles
    • PNAS Classics
    • List of Issues
  • Front Matter
    • Front Matter Portal
    • Journal Club
  • News
    • For the Press
    • This Week In PNAS
    • PNAS in the News
  • Podcasts
  • Authors
    • Information for Authors
    • Editorial and Journal Policies
    • Submission Procedures
    • Fees and Licenses
  • Submit
Commentary

Designed metalloenediyne warheads damage DNA and outpace DNA polymerase

View ORCID ProfileMartin L. Kirk
  1. aDepartment of Chemistry and Chemical Biology, The University of New Mexico, Albuquerque, NM 87131

See allHide authors and affiliations

PNAS September 5, 2017 114 (36) 9497-9499; first published August 29, 2017; https://doi.org/10.1073/pnas.1712545114
Martin L. Kirk
aDepartment of Chemistry and Chemical Biology, The University of New Mexico, Albuquerque, NM 87131
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • ORCID record for Martin L. Kirk
  • For correspondence: mkirk@unm.edu
  • Article
  • Figures & SI
  • Info & Metrics
  • PDF
Loading

Normal cells eventually undergo a highly regulated process of programmed cell death, or apoptosis, while abnormalities in this process may lead to uncontrolled cell proliferation and cancer. Cancer cells differ from normal cells with respect to their resistance to signals that control both cell growth and apoptosis. Furthermore, they divide more rapidly than normal cells, resulting in the development of cancerous tumors and metastasis. This has led to tremendous research efforts that aim to identify the various causes of cancer and aggressively treat this deadly disease. One strategy for combating cancer focuses on the inhibition of DNA polymerases, which function to synthesize DNA and are essential for DNA replication and damage repair. An orthogonal approach centers on the development of chemotherapeutic agents that can damage DNA in a manner that does not allow repair or replication by DNA polymerases. In PNAS, Zaleski and coworkers (1) use this latter approach and describe studies of new enediyne transition metal complexes (metalloenediynes) that function as cytotoxic metal-mediated diradical generators.

Enediynes (Fig. 1) are highly toxic bacterial natural product compounds that contain the 3-ene-1,5-diyne conjugated unit as part of a 9- to 10-member ring system (2). These compounds are susceptible to thermal-activated and photoactivated Bergman cycloaromatization reactions that result in the formation of 1,4-didehydrobenzene diradical derivatives. The diradicals generated from enediynes are highly reactive chemical “warheads” that can abstract hydrogen atoms from the DNA sugar backbone as a mechanistic component of their DNA cleaving reactivity. As such, they are among the most potent naturally occurring cytotoxic compounds that function as antitumor agents (2). Thus, many natural enediynes possess limited therapeutic utility due to their high toxicity. This has led to extensive research efforts focused on the design of new enediyne agents (3), the attachment of the enediyne warhead to drug delivery systems that specifically target DNA (2), and how to trigger a specific event or cascade of events that result in site-selective diradical formation (4). DNA double-strand breaks that are induced by enediyne activity can trigger a DNA damage protein response leading to cell cycle arrest. The activation of checkpoint pathways that regulate the mechanism of DNA repair can then lead to apoptotic cell death if the DNA lesion is not repairable (5).

Fig. 1.
  • Download figure
  • Open in new tab
  • Download powerpoint
Fig. 1.

(A) Thermal and photochemical activation of enediynes to the diradical intermediate. (B) Simple potential energy diagram indicating the intermediate nature of the diradical. (C) Activation of dynemicin A via epoxide ring opening. (D) Activation of the PyED ligand by metal ion complexation. In C and D, the enediyne warhead is depicted in red.

The cycloaromatization reaction that leads to diradical formation is similar to Woodward–Hoffmann [2+2] cycloadditions (6). Key to the reactivity of enediynes is the proximity (7, 8) of the terminal -yne C1–C6 carbon atoms, which interact along the reaction coordinate to form the cyclized diradical intermediate (Fig. 1 B and C). For example, ab initio computations indicate that the parent (Z)-hex-3-ene-1,5-diyne possesses a C1–C6 distance of 4.32 Å (9) and is quite stable at physiological temperature with an activation enthalpy (ΔH‡) of 28.2 kcal/mol. Nicolaou et al. (7, 10) have provided an empirical rule indicating that a critical C1–C6 distance of ∼3.20–3.31 Å is required for spontaneous Bergman cyclization reactivity at 36.5–37.5 °C (i.e., physiological temperature). In addition to the C1–C6 distance, other contributions to enediyne reactivity include ring strain effects (11, 12) and the underpinning enediyne electronic structure (e.g., configuration interaction, pseudo-Jahn–Teller effects, etc.) (6, 9). Taken together, these effects contribute to both transition state and diradical stabilization. A novel way to affect the reactivity of enediynes is to use them as components of metal binding ligands (Fig. 1D). Since the geometry of the enediyne-containing ligand will change upon binding to a metal ion, chelation may be able to affect the enediyne electronic structure and trigger the activation of Bergman cyclizations. This approach would provide a powerful way to modulate proximity, strain, and electronic structure effects on reactivity.

Zaleski and his team are pioneers in the synthesis, spectroscopy, and electronic structure characterization of metalloenediynes. They have designed redox-mediated Bergman cyclization reactions for the development of new metalloenediyne prodrugs (13) and have photothermally activated metalloenediyne cyclizations using near-infrared excitation into low-energy ligand-to-metal charge transfer bands (14). Additionally, they have shown that both the thermal (15) and photochemical (16, 17) reactivity of enediynes are affected when the enediyne is a component of a ligand that is bound to a transition metal ion. Their MLX2 metalloenediyne complexes (X = halogen; L = enediyne-based ligand) display Bergman cyclization temperatures that range from 136° to 225 °C in the solid state, with the reactivity differences deriving from both electronic and steric interactions between the halogen donor and the enediyne π system. The study showed both ancillary ligand and intraligand effects on metalloenediyne thermal reactivity at approximate parity of the terminal alkyne C1–C6 separation distance, highlighting electronic influences on reactivity (18, 19).

In PNAS, Zaleski and coworkers (1) synthesize and spectroscopically characterize new Cu(II), Zn(II), and Fe(II) complexes coordinated by an enediyne-containing chelating ligand. Bergman cyclization rates for these M(PyED)•2Cl complexes are expected to increase in the order Zn(II) < Fe(II) < Cu(II), which parallels the reduction in enediyne C1–C6 distances determined from density functional theory computations (1). Their spectroscopic analysis of the Cu(PyED)•Cl2 complex shows that the Jahn–Teller distortion present in this d9 system is responsible for the shorter interalkynyl distance and increased reactivity. This underscores how coordination number, geometry, and the d-electron configuration of transition metal ions may conspire to provide a remarkable electronic structure control of metalloenediyne reactivity. Importantly, they have shown that transition metals can effectively tune the diradical activity of Bergman cyclized enediynes to initiate cell cycle arrest at the G2/M checkpoint. HeLa cells that were treated with Cu(PyED)•SO4 provide evidence that effective DNA damage occurs in vivo, with an IC50 cellular toxicity of 10.5 μM. Remarkably, Cu(PyED)•SO4 cleaves the DNA template strand before the polymerase can extend it. The ability of Cu(PyED)•SO4 and related Cu(II) enediyne complexes to damage DNA is important since Cu(II) is required for tumorigenesis and is observed in malignancies at increased levels (20, 21). The implication is that, once the enediyne ligand has entered the cell, it can bind to, and be activated by, Cu(II) for diradical formation (1). Since the PyED ligand itself is stable, as evidenced by minimal DNA degradation at physiological temperature (1), the metal ion effectively acts as a trigger to activate the enediyne for diradical formation. Great potential exists to further exploit this strategy in the design of relatively unreactive prodrug molecules that can be activated site specifically in cancer cells with high cytotoxicity.

Footnotes

  • ↵1Email: mkirk{at}unm.edu.
  • Author contributions: M.L.K. wrote the paper.

  • The author declares no conflict of interest.

  • See companion article on page E7405.

References

  1. ↵
    1. Porter MR, et al.
    (2017) Metal-mediated diradical tuning for DNA replication arrest via template strand scission. Proc Natl Acad Sci USA 114:E7405–E7414.
    .
    OpenUrlAbstract/FREE Full Text
  2. ↵
    1. Nicolaou KC,
    2. Smith AL,
    3. Yue EW
    (1993) Chemistry and biology of natural and designed enediynes. Proc Natl Acad Sci USA 90:5881–5888.
    .
    OpenUrlAbstract/FREE Full Text
  3. ↵
    1. Nicolaou KC, et al.
    (2016) Streamlined total synthesis of uncialamycin and its application to the synthesis of designed analogues for biological investigations. J Am Chem Soc 138:8235–8246.
    .
    OpenUrlCrossRef
  4. ↵
    1. Weber G
    (2015) Molecular Therapies of Cancer (Springer International Publishing, New York).
    .
  5. ↵
    1. Branzei D,
    2. Foiani M
    (2008) Regulation of DNA repair throughout the cell cycle. Nat Rev Mol Cell Biol 9:297–308.
    .
    OpenUrlCrossRefPubMed
  6. ↵
    1. Mohamed RK,
    2. Peterson PW,
    3. Alabugin IV
    (2013) Concerted reactions that produce diradicals and zwitterions: Electronic, steric, conformational, and kinetic control of cycloaromatization processes. Chem Rev 113:7089–7129.
    .
    OpenUrl
  7. ↵
    1. Nicolaou KC,
    2. Zuccarello G,
    3. Ogawa Y,
    4. Schweiger EJ,
    5. Kumazawa T
    (1988) Cyclic conjugated enediynes related to calicheamicins and esperamicins: Calculations, synthesis, and properties. J Am Chem Soc 110:4866–4868.
    .
    OpenUrl
  8. ↵
    1. Ahlstrom B,
    2. Kraka E,
    3. Cremer D
    (2002) The Bergman reaction of dynemicin A: A quantum chemical investigation. Chem Phys Lett 361:129–135.
    .
    OpenUrl
  9. ↵
    1. Kraka E,
    2. Cremer D
    (2014) Enediynes, enyne-allenes, their reactions, and beyond. Wiley Interdiscip Rev Comput Mol Sci 4:285–324.
    .
    OpenUrl
  10. ↵
    1. Nicolaou KC,
    2. Zuccarello G,
    3. Riemer C,
    4. Estevez VA,
    5. Dai WM
    (1992) Design, synthesis, and study of simple monocyclic conjugated enediynes: The 10-membered ring enediyne moiety of the enediyne anticancer antibiotics. J Am Chem Soc 114:7360–7371.
    .
    OpenUrl
  11. ↵
    1. Magnus P,
    2. Fortt S,
    3. Pitterna T,
    4. Snyder JP
    (1990) Synthetic and mechanistic studies on esperamicin A1 and calicheamicin. gamma.1: Molecular strain rather than pi-bond proximity determines the cycloaromatization rates of bicyclo(7.3.1) enediynes. J Am Chem Soc 112:4986–4987.
    .
    OpenUrl
  12. ↵
    1. Snyder JP
    (1990) Monocyclic enediyne collapse to 1,4-diyl biradicals: A pathway under strain control. J Am Chem Soc 112:5367–5369.
    .
    OpenUrl
  13. ↵
    1. Lindahl SE,
    2. Park H,
    3. Pink M,
    4. Zaleski JM
    (2013) Utilizing redox-mediated Bergman cyclization toward the development of dual-action metalloenediyne therapeutics. J Am Chem Soc 135:3826–3833.
    .
    OpenUrl
  14. ↵
    1. Kraft BJ, et al.
    (2003) Photothermally induced Bergman cyclization of metalloenediynes via near-infrared ligand-to-metal charge-transfer excitation. Inorg Chem 42:1663–1672.
    .
    OpenUrlPubMed
  15. ↵
    1. Nath M,
    2. Huffman JC,
    3. Zaleski JM
    (2003) Ambient temperature activation of haloporphyrinic-enediynes: Electronic contributions to Bergman cycloaromatization. J Am Chem Soc 125:11484–11485.
    .
    OpenUrlPubMed
  16. ↵
    1. Bhattacharyya S,
    2. Zaleski JM
    (2004) Metalloenediynes: Advances in the design of thermally and photochemically activated diradical formation for biomedical applications. Curr Top Med Chem 4:1637–1654.
    .
    OpenUrlPubMed
  17. ↵
    1. Boerner LJK,
    2. Zaleski JM
    (2005) Metal complex-DNA interactions: From transcription inhibition to photoactivated cleavage. Curr Opin Chem Biol 9:135–144.
    .
    OpenUrlCrossRefPubMed
  18. ↵
    1. Bhattacharyya S,
    2. Clark AE,
    3. Pink M,
    4. Zaleski JM
    (2009) Structure modulated electronic contributions to metalloenediyne reactivity: Synthesis and thermal Bergman cyclization of MLX2 compounds. Inorg Chem 48:3916–3925.
    .
    OpenUrlPubMed
  19. ↵
    1. Clark AE,
    2. Bhattacharryya S,
    3. Zaleski JM
    (2009) Density functional analysis of ancillary ligand electronic contributions to metal-mediated enediyne cyclization. Inorg Chem 48:3926–3933.
    .
    OpenUrlPubMed
  20. ↵
    1. Brady DC, et al.
    (2014) Copper is required for oncogenic BRAF signalling and tumorigenesis. Nature 509:492–496.
    .
    OpenUrlCrossRefPubMed
  21. ↵
    1. Zowczak M,
    2. Iskra M,
    3. Torliński L,
    4. Cofta S
    (2001) Analysis of serum copper and zinc concentrations in cancer patients. Biol Trace Elem Res 82:1–8.
    .
    OpenUrlCrossRefPubMed
PreviousNext
Back to top
Article Alerts
Email Article

Thank you for your interest in spreading the word on PNAS.

NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

Enter multiple addresses on separate lines or separate them with commas.
Designed metalloenediyne warheads damage DNA and outpace DNA polymerase
(Your Name) has sent you a message from PNAS
(Your Name) thought you would like to see the PNAS web site.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Citation Tools
Designed metalloenediyne warheads
Martin L. Kirk
Proceedings of the National Academy of Sciences Sep 2017, 114 (36) 9497-9499; DOI: 10.1073/pnas.1712545114

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Request Permissions
Share
Designed metalloenediyne warheads
Martin L. Kirk
Proceedings of the National Academy of Sciences Sep 2017, 114 (36) 9497-9499; DOI: 10.1073/pnas.1712545114
del.icio.us logo Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
  • Tweet Widget
  • Facebook Like
  • Mendeley logo Mendeley

Article Classifications

  • Physical Sciences
  • Chemistry
  • Biological Sciences
  • Biochemistry

See related content:

  • Metal-mediated diradical DNA replication arrest
    - Jul 31, 2017
Proceedings of the National Academy of Sciences: 114 (36)
Table of Contents

Submit

Sign up for Article Alerts

Jump to section

  • Article
    • Footnotes
    • References
  • Figures & SI
  • Info & Metrics
  • PDF

You May Also be Interested in

Smoke emanates from Japan’s Fukushima nuclear power plant a few days after tsunami damage
Core Concept: Muography offers a new way to see inside a multitude of objects
Muons penetrate much further than X-rays, they do essentially zero damage, and they are provided for free by the cosmos.
Image credit: Science Source/Digital Globe.
Water from a faucet fills a glass.
News Feature: How “forever chemicals” might impair the immune system
Researchers are exploring whether these ubiquitous fluorinated molecules might worsen infections or hamper vaccine effectiveness.
Image credit: Shutterstock/Dmitry Naumov.
Venus flytrap captures a fly.
Journal Club: Venus flytrap mechanism could shed light on how plants sense touch
One protein seems to play a key role in touch sensitivity for flytraps and other meat-eating plants.
Image credit: Shutterstock/Kuttelvaserova Stuchelova.
Illustration of groups of people chatting
Exploring the length of human conversations
Adam Mastroianni and Daniel Gilbert explore why conversations almost never end when people want them to.
Listen
Past PodcastsSubscribe
Panda bear hanging in a tree
How horse manure helps giant pandas tolerate cold
A study finds that giant pandas roll in horse manure to increase their cold tolerance.
Image credit: Fuwen Wei.

Similar Articles

Site Logo
Powered by HighWire
  • Submit Manuscript
  • Twitter
  • Facebook
  • RSS Feeds
  • Email Alerts

Articles

  • Current Issue
  • Special Feature Articles – Most Recent
  • List of Issues

PNAS Portals

  • Anthropology
  • Chemistry
  • Classics
  • Front Matter
  • Physics
  • Sustainability Science
  • Teaching Resources

Information

  • Authors
  • Editorial Board
  • Reviewers
  • Subscribers
  • Librarians
  • Press
  • Cozzarelli Prize
  • Site Map
  • PNAS Updates
  • FAQs
  • Accessibility Statement
  • Rights & Permissions
  • About
  • Contact

Feedback    Privacy/Legal

Copyright © 2021 National Academy of Sciences. Online ISSN 1091-6490