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Quantum indistinguishability in chemical reactions
Contributed by Matthew P. A. Fisher, March 26, 2018 (sent for review October 23, 2017; reviewed by Eduardo Fradkin and Ashvin Vishwanath)

Significance
Counter to conventional approaches that treat nuclear coordinates classically, we explore quantum indistinguishability of nuclei in enzymatic chemical reactions of small symmetric molecules. Supported by several physical arguments, we conjecture a far-reaching “quantum dynamical selection” (QDS) rule that precludes enzymatic chemical bond-breaking reactions from orbitally nonsymmetric molecular states. We propose and discuss experimental implications of QDS, such as (i) differential chemical reactivity in ortho- and parahydrogen, (ii) a mass-independent mechanism for isotope fractionation, (iii) an explanation of the enhanced chemical activity of “reactive oxygen species”, (iv) a route to parahydrogen-induced hyperpolarization important for zero-field NMR spectroscopy, and (v) critical quantum-to-biochemical linkage in the nuclear spin model of the (putative) quantum brain, among others.
Abstract
Quantum indistinguishability plays a crucial role in many low-energy physical phenomena, from quantum fluids to molecular spectroscopy. It is, however, typically ignored in most high-temperature processes, particularly for ionic coordinates, implicitly assumed to be distinguishable, incoherent, and thus well approximated classically. We explore enzymatic chemical reactions involving small symmetric molecules and argue that in many situations a full quantum treatment of collective nuclear degrees of freedom is essential. Supported by several physical arguments, we conjecture a “quantum dynamical selection” (QDS) rule for small symmetric molecules that precludes chemical processes that involve direct transitions from orbitally nonsymmetric molecular states. As we propose and discuss, the implications of the QDS rule include (i) a differential chemical reactivity of para- and orthohydrogen, (ii) a mechanism for inducing intermolecular quantum entanglement of nuclear spins, (iii) a mass-independent isotope fractionation mechanism, (iv) an explanation of the enhanced chemical activity of “reactive oxygen species”, (v) illuminating the importance of ortho-water molecules in modulating the quantum dynamics of liquid water, and (vi) providing the critical quantum-to-biochemical linkage in the nuclear spin model of the (putative) quantum brain, among others.
- quantum chemical reactions
- quantum indistinguishability
- nuclear spin coherence
- Berry phases in chemical reactions
The far-reaching impact of quantum indistinguishability in few-particle collisions, in molecular spectroscopy (1), and in the low-temperature behavior of macroscopic many-body systems (e.g., superfluidity) is well appreciated and extensively studied (2). However, the role of indistinguishability for the dynamics of macroscopic systems at high temperature remains virtually unexplored, typically neglected due to the presumed absence of necessary quantum coherence. For cohesion of both solids and molecules, while electrons are treated quantum mechanically, the much heavier ions are treated as distinguishable and classical. Moreover, in chemical reactions of molecules in solution, nuclear spins are generally believed to play little role, despite their macroscopic quantum coherence times [especially for spin-
Molecular hydrogen offers the simplest setting for discussing the interplay of indistinguishability and chemical reactivity. While the two electrons are tightly bound in a symmetric molecular orbital, the proton nuclear spins are weakly coupled, so that molecular hydrogen comes in two isomers, parahydrogen (nuclear spin singlet) and orthohydrogen (nuclear spin triplet). Treating the motion of the nuclei quantum mechanically, the Pauli principle dictates that molecular para- and orthohydrogen rotate with even and odd angular momentum, respectively.
A natural question, that to the best of our knowledge has not been asked, is whether the para- and orthospin isomers of molecular hydrogen exhibit different chemical reaction rates in solvent. If yes, as might be expected from the different rotational properties of the two spin isomers, what is the magnitude and “sign” of the effect? Intuitively, one might expect such effects to be small, especially at temperatures well above the rotational constant.
In this paper we explore this and related questions in a number of systems, focusing on enzymatic reactions with the substrate consisting of a small symmetric molecule, characterized by a “quasi-angular momentum,”
It should be noted that the “radical-pair mechanism” (5) has been proposed as a process for nuclear spins modulating chemical reaction rates. However, the radical-pair mechanism is quite distinct from the QDS mechanism, with no role for the quantum mechanics of the nuclear coordinates in the former and no role for electron spins (free radicals) in the latter.
Before exploring the role of quantum indistinguishability in chemical processes, we briefly comment on the important issue of quantum decoherence, the common prejudice being that rapid decoherence in a wet solution will render all quantum phenomena inoperative. Indeed, elevated temperatures will generally move a system toward classical behavior. For example, when a physical process oscillating with a characteristic frequency, ω, is immersed in a thermal environment, quantum effects will typically wash out for T
Nuclei with spin-
As we detail in Theoretical Framework and Planar Symmetric Molecules, the symmetry of the nuclear spin wavefunction in such symmetric molecules will dictate a characteristic quasi-angular momentum,
The rest of this paper is organized as follows. In Theoretical Framework, focusing on small symmetric molecules with
Theoretical Framework
Beyond Born–Oppenheimer Approximation.
In this section we present the basic framework for our subsequent discussion of the role of symmetry and quantum indistinguishability in chemical processes involving catalytically assisted bond breaking in symmetric molecules. In molecular processes the electrons, as fast degrees of freedom, are appropriately treated as fully quantum-mechanical indistinguishable fermions. In contrast, the constraints of quantum indistinguishability on the nuclear orbital degrees of freedom when treated within the Born–Oppenheimer approximation are invariably neglected, especially in solution chemistry [although not always in molecular spectroscopy (1)]. The molecular dynamics and chemical reactions are thus assumed to be fully controlled by classical motion of the molecular collective coordinates on the Born–Oppenheimer adiabatic energy surface. While this may be adequate for some systems, we argue that it can be wholly insufficient for chemical reactions in small symmetric molecules. As we discuss, in such systems, the nuclear and electron spin degrees of freedom can induce Berry phases that constrain the molecular orbital dynamics on the adiabatic energy surface, which must then be treated quantum mechanically since these Berry phases do not enter the classical equations of motion. As we argue, the presence of Berry phases can have strong and previously unappreciated order-one effects in chemical bond-breaking processes.
Planar Symmetric Molecules.
For simplicity of presentation we focus primarily on molecules which possess only a single n-fold symmetry axis that under a
For such molecules the nuclear spin states can be conveniently chosen to be eigenstates of
Molecular trimer of identical fermionic nuclei.
For illustrative clarity we first formulate the problem for the case of
Schematic of a bond-breaking chemical reaction. (Left) Initial state of a
Because a discrete
In addition to the nuclei, a correct description of a molecule must also consist of bonding electrons that, within the Born–Oppenheimer approximation, occupy the molecular orbitals. For concreteness we consider a (singly ionized) molecule with only two electrons that form a spin singlet in the ground-state molecular orbital
In Eq. 7 the ket
Molecular dimer and atom products state.
As illustrated in Fig. 1, the bond-breaking reaction proceeds through an intermediate enzymatic stage that is challenging to describe microscopically. Through its interaction with the electronic orbital degrees of freedom the enzyme temporarily binds and “holds” two of the nuclei, separating them from the third nucleus. This causes molecular rotations to cease and also weakens the molecular bonds. We assume that the final product state consists of a neutral molecular dimer, D
This final product state P can then be expressed as
Because we do not expect the nuclear spins state in each τ sector to change appreciably through the chemical reaction, the atomic and dimer states remain entangled through the original nuclear spin wavefunction,
Since an enzymatic chemical reaction will typically be strongly exothermic (releasing, for example, a fraction of electron volts in energy), the quantum state of the environment after the reaction,
Generalization to arbitrary n-mer.
Here we briefly generalize from
Quantum Dynamical Selection Rule
We can now state our conjecture, which we refer to as a QDS rule: A bond-breaking enzymatic chemical reaction on a symmetric planar molecule implements a projective measurement onto zero quasi-angular momentum,
More generally, including for molecules with 3D rotational symmetries such as
Here, “direct” implies that the transition proceeds without the molecule first undergoing a nuclear spin flip. For example, the orthostate of molecular hydrogen (which has odd angular momentum) cannot undergo a direct bond-breaking transition without passing through the parastate. For the
Arguments for QDS Conjecture
For conceptual reasons it is helpful to divide the enzyme-mediated chemical reaction into three stages, each a distinct quantum state of the molecule and enzyme: (i) a state
The full enzymatic chemical reaction corresponds to a process that takes the system from state
A Rotating Symmetric Molecule.
We begin with a precise definition of the initial quantum mechanical state of the rotating symmetric molecule, offering three representations of the accessible Hilbert space. For the case of a diatomic (
Three representations of a rotating diatomic molecule composed of identical nuclei. (A) An explicit physical representation. (B) An effective model for the dynamics of the angular coordinate,
Mapping to quantum bead on a ring.
To proceed requires a careful discussion of the Hilbert space for the “angle” kets that are eigenkets of the angle operator,
To expose the physics of this flux it is useful to consider the Lagrangian of the quantum bead on the ring,
It must be emphasized that the wavefunction for the bead on the ring, which we denote as
Mobius strip and umbilic torus.
To resolve any ambiguity in the placement of the branch cut with bond breaking present, it is helpful to view the bead as living on an n-fold cover of the ring. Mathematically, we simply extend the range of φ to lie in the interval
A “Not-Rotating” Molecule.
A first step in the bond-breaking process requires stopping the molecule’s rotation as it binds to the enzyme. What does it mean for a small symmetric molecule to be not rotating and perhaps having zero angular velocity? For 1D translational motion the linear (group) velocity of a quantum particle is
One plausible definition of a molecule to be not rotating is for its orbital motion to be described by a real wavefunction. For odd n this is equivalent to requiring zero quasi-angular momentum,
We believe the best way to impose a not-rotating restriction of the molecule is to impose a constraint that disallows a dynamical rotation which implements an exchange of the constituent atoms. This can be achieved by inserting impenetrable potential wedges at angles centered around
Two representations of a nonrotating diatomic molecule composed of identical nuclei. (A) An explicit physical representation with impenetrable potential wedges inserted around
Upon mapping to the effective coordinate,
A Bond-Broken Molecule.
Once the molecule is not rotating and the identical fermions are effectively distinguishable, a breaking of the chemical bond is greatly simplified. As illustrated in Fig. 4A, with the impenetrable barriers present the molecular bond can break and the constituent atoms are free to move off into the upper and lower half-planes, respectively. Once the atoms are physically well separated, their distinguishability no longer rests on the presence of the impenetrable barriers.
Two representations of a bond-broken diatomic molecule composed of identical but distinguishable nuclei. (A) An explicit physical representation with impenetrable potential wedges inserted at
In the quantum-bead representation, illustrated in Fig. 4B, the bond-breaking process corresponds to the bead tunneling off the line segment. As such, the location of the bead must now be specified by both the angle φ and a radial coordinate, r, the bead wavefunction taking the form
Since this bond-breaking process will typically be macroscopically irreversible, we assume that once the bead tunnels off the line segment it will not return. The tunneling rate for this process can be then expressed in terms of a Fermi’s golden rule,
Indistinguishable-to-Distinguishable Projective Measurement.
We now turn to the more subtle process where the “rotating” molecule transitions into the not-rotating state, which occurs when the enzyme “catches” the molecule. When the molecule is rotating, in state
The transition rate for this process,
Since the rotating molecule wavefunction,
Physically, for
The enzymatic projective measurement that induces a transition from a rotating to a not-rotating molecular state can be described as a projective overlap between the rotating state with the quantum bead on the Mobius strip,
Since the enzymatic reaction requires both stopping the molecules rotation, with rate
More physically, this blocking is due to the destructive interference between the n-possible bond-breaking processes—one for each of the symmetry-related molecular orbital configurations. These considerations thus provide support for our conjectured QDS rule that states the impossibility of (directly) breaking a chemical bond of a symmetric molecule rotating nonsymmetrically.
Conceptual and Experimental Implications
There are numerous experimental implications of the QDS rule. Since this rule should indeed be viewed as a conjecture, it will have to be validated or falsified by comparison of theoretical predictions with experiments. Below, we discuss some implications of QDS.
Differential Reactivity of Para-/Orthohydrogen.
Hydrogen provides the most familiar example of molecular spin isomers, parahydrogen with singlet entangled proton spins and rotating with even angular momentum, and orthohydrogen with triplet spin entanglement and odd rotational angular momentum. Since the allowed rotational angular momentum of such homonuclear dimer molecules with S =
Many microbes in biology (7) use H2 as a metabolite, and the enzyme hydrogenase catalyzes the bond-breaking chemical reaction,
Possible differential combustion of para- and orthohydrogen with, say, oxygen might also be interesting to explore, even though this reaction is not enzymatic.
Intermolecular Entanglement of Nuclear Spins.
The ability to prepare purified parahydrogen molecules in solvent and drive a bond-breaking chemical reaction enables the preparation of two protons with nuclear spins entangled in a singlet. If–when these two protons bind onto a large molecule with different chemical environments, it is sometimes possible to perform a π rotation on one of the two nuclei to create alignment of the two spins, termed hyperpolarization. These hyperpolarized proton spins can then be used to transfer spin polarization to the nuclei of atoms on the molecules to which they are bonded.
There is, of course, a long precedent for liquid-state NMR, exploiting the fact of very long decoherence times in the rapidly fluctuating liquid environment (3). Indeed, soon after Peter Shor developed his prime factoring quantum algorithm, liquid-state NMR quantum computing efforts were the first out of the gate (8). In NMR quantum computing one uses a solvent hosting a concentration of identical molecules with multiple nuclear spins (say, protons). Ideally, the chemical environments of the different nuclei are different, so that they each have a different NMR chemical shift, and can thereby be addressed independently by varying the radio frequency. In principle it is then possible to perform qubit operations on these spins. However, there are two major drawbacks to NMR quantum computing—the difficulty in scalability and the challenge of preparing sufficiently entangled initial states. As we now suggest, it is possible that both of these can be circumvented by using small symmetric molecules which are the substrate for bond-breaking enzymes.
By way of illustration, we consider the symmetric biochemical ion pyrophosphate, P2
In biochemistry there is an enzyme (called pyrophosphatase) which catalyzes the bond-breaking reaction, PPi → Pi + Pi. Due to the Berry phase term in ortho-PPi, we expect that this reaction will be strongly suppressed, if not blocked entirely. Then, provided only para-PPi reacts, the two liberated Pi ions will have nuclear spins which are entangled in a singlet. Such intermolecular entanglement of nuclear spins could, in principle, jump start liquid-state NMR quantum computing efforts, allowing for both scalability and highly entangled initial-state preparation.
QDS Mass-Independent Mechanism for Isotope Fractionation.
Isotope fractionation refers to processes that affect the relative abundance of (usually) stable isotopes, often used in isotope geochemistry and biochemistry. There are several known mechanisms. Kinetic isotope fractionation is a mass-dependent mechanism in which the diffusion constant of a molecule varies with the mass of the isotope. This process is relevant to oxygen evaporation from water, where an oxygen molecule, which has one (or two) of the heavier oxygen isotopes (17O and 18O), is less likely to evaporate. This leads to a slight depletion in the isotope ratios of 17O/16O and 18O/16O in the vapor relative to that in the liquid water.
Another mass-dependent isotope fractionation phenomenon occurs in some chemical reactions, where the isotope abundances in the products of the reaction are (very) slightly different from those in the reactants. In biochemistry this effect is usually ascribed to an isotopic mass-induced change in the frequency of the molecular quantum zero-point vibrational fluctuations when bonded in the pocket of an enzyme. This modifies slightly the energy of the activation barrier which must be crossed for the bond-breaking reaction to proceed.
However, there are known isotopic fractionation processes which are “mass independent,” a classic example being the increased abundance of the heavier oxygen isotopes in the formation of ozone from two oxygen molecules (9). In ozone isotope fractionation the relative increased abundance of 17O and 18O is largely the same. While there have been theoretical proposals to explain this ozone isotope anomaly, these are not without controversy (10).
Here, as we briefly describe, our conjectured QDS rule for chemical reactions involving small symmetric molecules leads naturally to the prediction of a mass-independent mechanism for isotope fractionation, driven by the quantum distinguishability of the two different isotopes. In the presence of isotopes that destroy the molecular rotational symmetry, the QDS rule is no longer operative and one would expect the chemical reaction to proceed more rapidly.
By way of illustration we again consider the enzymatic hydrolysis reaction, PPi → Pi + Pi. As we now detail, in this experiment one would predict a large heavy oxygen isotope fractionation effect. Indeed, if one of the six “end” oxygens in PPi is a heavy oxygen isotope, the symmetry of PPi under a rotation is broken and the reaction becomes “unblocked” (independent of the nuclear spin state).
If correct, we would then predict a very large mass-independent oxygen isotope fractionation which concentrates the heavy oxygen isotopes in the products (Pi + Pi). For the early stages of this reaction, before the isotopically modified PPi are depleted, one would, in fact, predict a factor of 4 increase in the ratios of 17O/16O and 18O/16O in the enzymatic reaction PPi → Pi + Pi.
To be more quantitative we introduce a dimensionless function,
Activity of Reactive Oxygen Species.
In biochemistry it is well known that during ATP synthesis the oxygen molecule picks up an electron and becomes a negatively charged “superoxide” ion,
In contrast to the ROS, the stable state of molecular oxygen (“triplet oxygen”) is less reactive in biology. As we detail below, we propose that this difference from triplet molecular oxygen can be understood in terms of our conjectured QDS rule.
First, we note that standard analysis of electronic molecular states (that we relegate to Supporting Information) shows that under C2 rotation the electronic states in the triplet molecular (neutral) oxygen exhibit an overall sign change. Because 16O nuclei are spinless bosons, there is no nuclear contribution to the Berry phase.
Thus, the triplet neutral oxygen molecule O2 exhibits a purely electronic π Berry phase, despite a spinless bosonic character of the 16O nuclei. It therefore rotates with odd angular momentum,
In contrast to triplet oxygen, the superoxide ion
As a result, the QDS is not operative and thus there is no selection rule precluding a direct bond-breaking chemical reaction of the superoxide ion. We propose that it is this feature of superoxide, relative to triplet oxygen, which accounts, at least in part, for the high reactivity of superoxide and explains why it is a “ROS.”
Ortho-Water as a Quantum Disentangled Liquid.
Molecular water has a C2 symmetry axis which exchanges the two protons. Thus, as for molecular hydrogen, water comes in two variants, para-water and ortho-water which rotate with even and odd angular momentum, respectively. QDS then predicts that the ortho-water molecule (with
Since the difference between the rotational kinetic energy of a parawater and an ortho-water molecule is roughly 30 K, liquid water consists of 75% ortho-water molecules and 25% parawater molecules. In one remarkable paper (13) it was reported that gaseous water vapor can be substantially enriched in either ortho- or para-water molecules and then condensed to create ortho- and para-liquid water—although attempts to reproduce this work have been unsuccessful (14). If QDS is operative, ortho-liquid water would be quite remarkable, having zero concentration of either “free” protons or free hydroxide ions, despite these being energetically accessible at finite temperature. Theoretically, ortho-liquid water would then be an example of a “quantum disentangled liquid” in which the protons are enslaved to the oxygen ions and do not contribute independently to the entropy density (15).
Experimentally, one would predict that ortho-liquid water would have vanishingly small electrical conductivity, nonzero only due to ortho-to-para conversion. Data on “shocked” supercritical water indicate that above a critical pressure the electrical conductivity increases by nine orders of magnitude (16). Perhaps this is due to a transition from a quantum-disentangled to a thermal state, where most (if not all) of the ortho-water molecules are broken into a proton and a hydroxide ion, leading to a significant electrical conductivity?
The properties of ortho-solid ice might also be quite interesting, provided QDS is operative. While an extensive equilibrium entropy would still be expected (consistent with the ice rules), the quantum dynamics would be quite different. Rather than protons hopping between neighboring oxygen ions, in ortho-ice these processes would actually correspond to collective rotations of the water molecules. The nature of the quantum dynamical quenching of the entropy when ice is cooled to very low temperatures is worthy of future investigation.
Summary and Conclusions
In this paper we have explored the role of quantum indistinguishability of nuclear degrees of freedom in enzymatic chemical reactions. Focusing on chemical bond breaking in small symmetric molecules, we argued that the symmetry properties of the nuclear spins, which are entangled with—and dictate—the allowed angular momentum of the molecules’ orbital dynamics, can have an order one effect on the chemical reaction rate. Our central thesis is a QDS rule which posits that direct bond-breaking reactions from orbitally asymmetric molecular states are blocked, and only orbitally symmetric molecular states can undergo a bond-breaking reaction. This selection rule, which is not of energetic origin, arises due to a destructive interference in the Born amplitude for the enzymatically mediated projective measurement.
The QDS rule is intimately linked to the importance of Fermi/Bose indistinguishability of the nuclei during the enzymatic process which implements a projective measurement onto orbitally symmetric molecular states. Mathematically, a Berry phase term, which encodes the Fermi/Bose indistinguishability, leads to an interference between the multiple bond-breaking processes—one for each of the symmetry-related molecular orbital configurations. For an orbitally nonsymmetric molecular state this interference is destructive, thereby closing off the bond-breaking reaction—offering a mathematical description of the QDS rule.
In much of this paper we focused on simple molecules with a planar
Our QDS rule leads to a number of experimental implications that we explored in Conceptual and Experimental Implications, including (i) a differential chemical reactivity of para- and orthohydrogen, (ii) a mechanism for inducing intermolecular quantum entanglement of nuclear spins, (iii) a mass-independent isotope fractionation mechanism, (iv) an explanation of the enhanced chemical activity of ROS, and (v) illuminating the importance of ortho-water molecules in modulating the quantum dynamics of liquid water.
Acknowledgments
We are deeply indebted and most grateful to Stuart Licht for general discussions on this topic and especially for emphasizing the importance of oxygen isotope fractionation experiments to access the (putative) role of nuclear spins in the enzymatic hydrolysis of pyrophosphate, which we discussed in Conceptual and Experimental Implications, QDS Mass-Independent Mechanism for Isotope Fractionation. We also thank Jason Alicea, Leon Balents, Maissam Barkeshli, Steve Girvin, Victor Gurarie, Andreas Ludwig, Lesik Motrunich, Michael Mulligan, David Nesbitt, Nick Read, T. Senthil, Michael Swift, Ashvin Vishwanath, and Mike Zaletel for their patience and input on our work. M.P.A.F.’s research was supported in part by the National Science Foundation (NSF) under Grant DMR-14-04230 and by the Caltech Institute of Quantum Information and Matter, an NSF Physics Frontiers Center with support from the Gordon and Betty Moore Foundation. M.P.A.F. is grateful to the Heising-Simons Foundation for support. L.R. was supported by the Simons Investigator Award from the Simons Foundation, by the NSF under Grant DMR-1001240, by the NSF Material Research Science and Engineering Center Grant DMR-1420736, and by the Kavli Institute for Theoretical Physics (KITP) under Grant NSF PHY-1125915. L.R. thanks the KITP for its hospitality as part of the Synthetic Matter workshop and sabbatical program.
Footnotes
- ↵1To whom correspondence may be addressed. Email: mpaf{at}kitp.ucsb.edu or radzihov{at}colorado.edu.
Author contributions: M.P.A.F. and L.R. designed research; M.P.A.F. and L.R. performed research; M.P.A.F. analyzed data; and M.P.A.F. and L.R. wrote the paper.
Reviewers: E.F., University of Illinois at Urbana–Champaign; and A.V., Harvard University.
The authors declare no conflict of interest.
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1718402115/-/DCSupplemental.
Published under the PNAS license.
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