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Research Article

High-resolution μCT of a mouse embryo using a compact laser-driven X-ray betatron source

View ORCID ProfileJason M. Cole, Daniel R. Symes, Nelson C. Lopes, Jonathan C. Wood, Kristjan Poder, Saleh Alatabi, Stanley W. Botchway, Peta S. Foster, Sarah Gratton, Sara Johnson, Christos Kamperidis, Olena Kononenko, Michael De Lazzari, Charlotte A. J. Palmer, Dean Rusby, Jeremy Sanderson, Michael Sandholzer, Gianluca Sarri, Zsombor Szoke-Kovacs, Lydia Teboul, James M. Thompson, Jonathan R. Warwick, Henrik Westerberg, Mark A. Hill, Dominic P. Norris, Stuart P. D. Mangles, and Zulfikar Najmudin
  1. aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
  2. bCentral Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Chilton, Didcot OX11 0QX, United Kingdom;
  3. cGroup of Lasers and Plasmas (GoLP)/Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, University of Lisbon, Lisboa 1049-001, Portugal;
  4. dThe Mary Lyon Centre, MRC Harwell Institute, Harwell OX11 0RD, United Kingdom;
  5. eExtreme Light Infrastructure Attosecond Light Pulse Source (ELI-ALPS), ELI-HU Non-profit Ltd., H-6720 Szeged, Hungary;
  6. fLinear Accelerator Technologies, Deutsches Elektronen-Synchrotron (DESY), 22607 Hamburg, Germany;
  7. gCancer Research UK/Medical Research Council (CRUK/MRC) Oxford Institute for Radiation Research, Gray Laboratories, University of Oxford, Oxford OX3 7DQ, United Kingdom;
  8. hMedical Research Council (MRC) Harwell Institute, Harwell OX11 0RD, United Kingdom;
  9. iSchool of Mathematics and Physics, Queen’s University, Belfast BT7 1NN, United Kingdom

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PNAS June 19, 2018 115 (25) 6335-6340; first published June 5, 2018; https://doi.org/10.1073/pnas.1802314115
Jason M. Cole
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
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  • ORCID record for Jason M. Cole
Daniel R. Symes
bCentral Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Chilton, Didcot OX11 0QX, United Kingdom;
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  • For correspondence: dan.symes@stfc.ac.uk
Nelson C. Lopes
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
cGroup of Lasers and Plasmas (GoLP)/Instituto de Plasmas e Fusão Nuclear, Instituto Superior Técnico, University of Lisbon, Lisboa 1049-001, Portugal;
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Jonathan C. Wood
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
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Kristjan Poder
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
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Saleh Alatabi
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
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Stanley W. Botchway
bCentral Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Chilton, Didcot OX11 0QX, United Kingdom;
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Peta S. Foster
bCentral Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Chilton, Didcot OX11 0QX, United Kingdom;
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Sarah Gratton
bCentral Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Chilton, Didcot OX11 0QX, United Kingdom;
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Sara Johnson
dThe Mary Lyon Centre, MRC Harwell Institute, Harwell OX11 0RD, United Kingdom;
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Christos Kamperidis
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
eExtreme Light Infrastructure Attosecond Light Pulse Source (ELI-ALPS), ELI-HU Non-profit Ltd., H-6720 Szeged, Hungary;
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Olena Kononenko
fLinear Accelerator Technologies, Deutsches Elektronen-Synchrotron (DESY), 22607 Hamburg, Germany;
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Michael De Lazzari
gCancer Research UK/Medical Research Council (CRUK/MRC) Oxford Institute for Radiation Research, Gray Laboratories, University of Oxford, Oxford OX3 7DQ, United Kingdom;
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Charlotte A. J. Palmer
fLinear Accelerator Technologies, Deutsches Elektronen-Synchrotron (DESY), 22607 Hamburg, Germany;
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Dean Rusby
bCentral Laser Facility, Science and Technology Facilities Council (STFC) Rutherford Appleton Laboratory, Chilton, Didcot OX11 0QX, United Kingdom;
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Jeremy Sanderson
hMedical Research Council (MRC) Harwell Institute, Harwell OX11 0RD, United Kingdom;
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Michael Sandholzer
hMedical Research Council (MRC) Harwell Institute, Harwell OX11 0RD, United Kingdom;
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Gianluca Sarri
iSchool of Mathematics and Physics, Queen’s University, Belfast BT7 1NN, United Kingdom
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Zsombor Szoke-Kovacs
dThe Mary Lyon Centre, MRC Harwell Institute, Harwell OX11 0RD, United Kingdom;
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Lydia Teboul
dThe Mary Lyon Centre, MRC Harwell Institute, Harwell OX11 0RD, United Kingdom;
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James M. Thompson
gCancer Research UK/Medical Research Council (CRUK/MRC) Oxford Institute for Radiation Research, Gray Laboratories, University of Oxford, Oxford OX3 7DQ, United Kingdom;
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Jonathan R. Warwick
iSchool of Mathematics and Physics, Queen’s University, Belfast BT7 1NN, United Kingdom
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Henrik Westerberg
hMedical Research Council (MRC) Harwell Institute, Harwell OX11 0RD, United Kingdom;
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Mark A. Hill
gCancer Research UK/Medical Research Council (CRUK/MRC) Oxford Institute for Radiation Research, Gray Laboratories, University of Oxford, Oxford OX3 7DQ, United Kingdom;
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Dominic P. Norris
hMedical Research Council (MRC) Harwell Institute, Harwell OX11 0RD, United Kingdom;
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Stuart P. D. Mangles
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
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Zulfikar Najmudin
aThe John Adams Institute for Accelerator Science, Blackett Laboratory, Imperial College London, London SW7 2AZ, United Kingdom;
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  1. Edited by David A. Weitz, Harvard University, Cambridge, MA, and approved May 9, 2018 (received for review February 9, 2018)

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    Fig. 1.

    Schematic of the laser and X-ray beamlines. The laser beam (red) is incident upon a gas cell, producing an electron beam (blue) and an X-ray beam (green). All components are inside a vacuum chamber with the exception of the X-ray camera. The sample is kept at atmospheric pressure inside a secondary chamber.

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    Fig. 2.

    Characterization of the laser-betatron X-ray beam. (A) Measured transmission through metallic filters, with overlaid equivalent thicknesses of water in centimeters at this X-ray energy. (B) Distribution of X-ray critical energies Ecrit recorded during the tomographic scan. (C) Measured line-spread function (LSF) of the X-ray detector. (D) Integrated X-ray beam dose profile measured at the sample position using EBT3 radiochromic film irradiated with 100 X-ray pulses.

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    Fig. 3.

    Tomographic imaging of a 14.5-dpc mouse embryo. (A–D) Single X-ray projections (A and B) and sagittal slices from 3D reconstruction (C and D). A and C were acquired with the laser-betatron source and B and D with a commercial microfocus scanner.

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    Fig. 4.

    An isosurface rendering of the reconstruction from the laser source is depicted in gray. A sagittal slice of the reconstruction is overlaid in blue. Enlarged sections of sagittal, coronal, and transverse slices around the heart and liver are plotted in A and B, respectively. (Scale bars, 1 mm.)

  • Fig. 5.
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    Fig. 5.

    The average photon flux and characteristic energy of the X-ray source described here in comparison with previous results on laser-betatron X-ray sources (7, 11, 19–21). The lines represent the incident photon flux on a typical 4-MP detector after passing through 1 cm of water, assuming the X-ray beam fills the detector.

Data supplements

  • Supporting Information

    • Download Appendix (PDF)
    • Download Movie_S01 (M4V) - Volume rendering of the 3D tomographic reconstruction from the laser-betatron scan, rendered with the Drishti visualisation software. For computational ease this rendering was performed using a voxel array downsized by a factor of 5 in each dimension. Each of the voxels in the rendered array is the median of the nearest 125 voxels in the original array.
    • Download Movie_S02 (AVI) - Tomographic reconstruction from the laser-betatron scan similar to that shown in Movie S1 but with the volume rendering options adjusted to make lower density regions appear more transparent, enhancing the appearance of internal features.
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High-resolution μCT of a mouse embryo using a compact laser-driven X-ray betatron source
Jason M. Cole, Daniel R. Symes, Nelson C. Lopes, Jonathan C. Wood, Kristjan Poder, Saleh Alatabi, Stanley W. Botchway, Peta S. Foster, Sarah Gratton, Sara Johnson, Christos Kamperidis, Olena Kononenko, Michael De Lazzari, Charlotte A. J. Palmer, Dean Rusby, Jeremy Sanderson, Michael Sandholzer, Gianluca Sarri, Zsombor Szoke-Kovacs, Lydia Teboul, James M. Thompson, Jonathan R. Warwick, Henrik Westerberg, Mark A. Hill, Dominic P. Norris, Stuart P. D. Mangles, Zulfikar Najmudin
Proceedings of the National Academy of Sciences Jun 2018, 115 (25) 6335-6340; DOI: 10.1073/pnas.1802314115

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High-resolution μCT of a mouse embryo using a compact laser-driven X-ray betatron source
Jason M. Cole, Daniel R. Symes, Nelson C. Lopes, Jonathan C. Wood, Kristjan Poder, Saleh Alatabi, Stanley W. Botchway, Peta S. Foster, Sarah Gratton, Sara Johnson, Christos Kamperidis, Olena Kononenko, Michael De Lazzari, Charlotte A. J. Palmer, Dean Rusby, Jeremy Sanderson, Michael Sandholzer, Gianluca Sarri, Zsombor Szoke-Kovacs, Lydia Teboul, James M. Thompson, Jonathan R. Warwick, Henrik Westerberg, Mark A. Hill, Dominic P. Norris, Stuart P. D. Mangles, Zulfikar Najmudin
Proceedings of the National Academy of Sciences Jun 2018, 115 (25) 6335-6340; DOI: 10.1073/pnas.1802314115
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Proceedings of the National Academy of Sciences: 115 (25)
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