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Research Article

Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers

View ORCID ProfileChristina M. Bergey, Marie Lopez, Genelle F. Harrison, View ORCID ProfileEtienne Patin, Jacob A. Cohen, View ORCID ProfileLluís Quintana-Murci, Luis B. Barreiro, and George H. Perry
  1. aDepartment of Anthropology, Pennsylvania State University, University Park, PA 16802;
  2. bDepartment of Biology, Pennsylvania State University, University Park, PA 16802;
  3. cUnit of Human Evolutionary Genetics, Institut Pasteur, 75015 Paris, France;
  4. dGénomique Évolutive, Modélisation et Santé (UMR 2000), Centre National de la Recherche Scientifique, 75015 Paris, France;
  5. eCenter of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, 75015 Paris, France;
  6. fCentre de Recherche Centre Hospitalier Universitaire (CHU) Sainte-Justine, Université de Montréal, Montréal, QC H3T 1C5, Canada;
  7. gHuck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802

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PNAS November 27, 2018 115 (48) E11256-E11263; first published November 9, 2018; https://doi.org/10.1073/pnas.1812135115
Christina M. Bergey
aDepartment of Anthropology, Pennsylvania State University, University Park, PA 16802;
bDepartment of Biology, Pennsylvania State University, University Park, PA 16802;
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  • ORCID record for Christina M. Bergey
  • For correspondence: cxb585@psu.edu ghp3@psu.edu
Marie Lopez
cUnit of Human Evolutionary Genetics, Institut Pasteur, 75015 Paris, France;
dGénomique Évolutive, Modélisation et Santé (UMR 2000), Centre National de la Recherche Scientifique, 75015 Paris, France;
eCenter of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, 75015 Paris, France;
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Genelle F. Harrison
fCentre de Recherche Centre Hospitalier Universitaire (CHU) Sainte-Justine, Université de Montréal, Montréal, QC H3T 1C5, Canada;
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Etienne Patin
cUnit of Human Evolutionary Genetics, Institut Pasteur, 75015 Paris, France;
dGénomique Évolutive, Modélisation et Santé (UMR 2000), Centre National de la Recherche Scientifique, 75015 Paris, France;
eCenter of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, 75015 Paris, France;
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  • ORCID record for Etienne Patin
Jacob A. Cohen
bDepartment of Biology, Pennsylvania State University, University Park, PA 16802;
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Lluís Quintana-Murci
cUnit of Human Evolutionary Genetics, Institut Pasteur, 75015 Paris, France;
dGénomique Évolutive, Modélisation et Santé (UMR 2000), Centre National de la Recherche Scientifique, 75015 Paris, France;
eCenter of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, 75015 Paris, France;
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  • ORCID record for Lluís Quintana-Murci
Luis B. Barreiro
fCentre de Recherche Centre Hospitalier Universitaire (CHU) Sainte-Justine, Université de Montréal, Montréal, QC H3T 1C5, Canada;
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George H. Perry
aDepartment of Anthropology, Pennsylvania State University, University Park, PA 16802;
bDepartment of Biology, Pennsylvania State University, University Park, PA 16802;
gHuck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802
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  • For correspondence: cxb585@psu.edu ghp3@psu.edu
  1. Edited by Francisco M. Salzano, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil, and approved October 5, 2018 (received for review July 13, 2018)

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Article Information

vol. 115 no. 48 E11256-E11263
DOI: 
https://doi.org/10.1073/pnas.1812135115
PubMed: 
30413626

Published By: 
National Academy of Sciences
Print ISSN: 
0027-8424
Online ISSN: 
1091-6490
History: 
  • Published in issue November 27, 2018.
  • Published first November 9, 2018.

Article Versions

  • Previous version (November 9, 2018 - 14:03).
  • Previous version (November 12, 2018 - 11:41).
  • You are viewing the most recent version of this article.
Copyright & Usage: 
© 2018 Published under the PNAS license.

Author Information

  1. Christina M. Bergeya,b,1,
  2. Marie Lopezc,d,e,
  3. Genelle F. Harrisonf,
  4. Etienne Patinc,d,e,
  5. Jacob A. Cohenb,
  6. Lluís Quintana-Murcic,d,e,2,
  7. Luis B. Barreirof,2, and
  8. George H. Perrya,b,g,1,2
  1. aDepartment of Anthropology, Pennsylvania State University, University Park, PA 16802;
  2. bDepartment of Biology, Pennsylvania State University, University Park, PA 16802;
  3. cUnit of Human Evolutionary Genetics, Institut Pasteur, 75015 Paris, France;
  4. dGénomique Évolutive, Modélisation et Santé (UMR 2000), Centre National de la Recherche Scientifique, 75015 Paris, France;
  5. eCenter of Bioinformatics, Biostatistics and Integrative Biology, Institut Pasteur, 75015 Paris, France;
  6. fCentre de Recherche Centre Hospitalier Universitaire (CHU) Sainte-Justine, Université de Montréal, Montréal, QC H3T 1C5, Canada;
  7. gHuck Institutes of the Life Sciences, Pennsylvania State University, University Park, PA 16802
  1. Edited by Francisco M. Salzano, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil, and approved October 5, 2018 (received for review July 13, 2018)

Footnotes

  • ↵1To whom correspondence may be addressed. Email: cxb585{at}psu.edu or ghp3{at}psu.edu.
  • ↵2L.Q.-M., L.B.B., and G.H.P. contributed equally to this work.

  • Author contributions: C.M.B., L.Q.-M., L.B.B., and G.H.P. designed research; C.M.B., M.L., G.F.H., E.P., and J.A.C. performed research; C.M.B., M.L., G.F.H., and E.P. analyzed data; and C.M.B. and G.H.P. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: Exome data for the Batwa and Bakiga populations have been deposited in the European Genome–Phenome Archive (EGA), https://ega-archive.org/ (accession no. EGAS00001002457). All scripts used in the analysis are available on GitHub (https://github.com/bergeycm/rhg-convergence-analysis).

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1812135115/-/DCSupplemental.

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Article usage

Article usage: November 2018 to April 2021

AbstractFullPdf
Nov 20182982679336
Dec 201886119373
Total 20183843872409
Jan 20191985841
Feb 20191684427
Mar 20191445423
Apr 20191043214
May 20192184356
Jun 20191510130
Jul 2019714734
Aug 2019310828
Sep 2019156340
Oct 2019198835
Nov 2019126445
Dec 20191310344
Total 2019916905417
Jan 2020109928
Feb 2020911537
Mar 2020257427
Apr 20202313240
May 20201012244
Jun 20201511721
Jul 202056119
Aug 202096023
Sep 20201710938
Oct 20201612552
Nov 20202614160
Dec 20203911829
Total 20202041273418
Jan 2021137433
Feb 20211612960
Mar 20211211361
Apr 202186012
Total 202149376166
Total501234261410
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Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers
Christina M. Bergey, Marie Lopez, Genelle F. Harrison, Etienne Patin, Jacob A. Cohen, Lluís Quintana-Murci, Luis B. Barreiro, George H. Perry
Proceedings of the National Academy of Sciences Nov 2018, 115 (48) E11256-E11263; DOI: 10.1073/pnas.1812135115

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Polygenic adaptation and convergent evolution on growth and cardiac genetic pathways in African and Asian rainforest hunter-gatherers
Christina M. Bergey, Marie Lopez, Genelle F. Harrison, Etienne Patin, Jacob A. Cohen, Lluís Quintana-Murci, Luis B. Barreiro, George H. Perry
Proceedings of the National Academy of Sciences Nov 2018, 115 (48) E11256-E11263; DOI: 10.1073/pnas.1812135115
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