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Research Article

Intrinsically cell-penetrating multivalent and multitargeting ligands for myotonic dystrophy type 1

JuYeon Lee, Yugang Bai, Ullas V. Chembazhi, Shaohong Peng, Kevin Yum, Long M. Luu, Lauren D. Hagler, Julio F. Serrano, View ORCID ProfileH. Y. Edwin Chan, Auinash Kalsotra, and View ORCID ProfileSteven C. Zimmerman
  1. aDepartment of Chemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
  2. bInstitute of Chemical Biology and Nanomedicine, Hunan University, Changsha, 410082 Hunan, China;
  3. cState Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, 410082 Hunan, China;
  4. dDepartment of Chemistry, Hunan University, Changsha, 410082 Hunan, China;
  5. eDepartment of Biochemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
  6. fLaboratory of Drosophila Research, School of Life Sciences, The Chinese University of Hong Kong, Shatin N.T., Hong Kong Special Administrative Region, People's Republic of China

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PNAS April 30, 2019 116 (18) 8709-8714; first published April 11, 2019; https://doi.org/10.1073/pnas.1820827116
JuYeon Lee
aDepartment of Chemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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Yugang Bai
bInstitute of Chemical Biology and Nanomedicine, Hunan University, Changsha, 410082 Hunan, China;
cState Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, 410082 Hunan, China;
dDepartment of Chemistry, Hunan University, Changsha, 410082 Hunan, China;
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Ullas V. Chembazhi
eDepartment of Biochemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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Shaohong Peng
fLaboratory of Drosophila Research, School of Life Sciences, The Chinese University of Hong Kong, Shatin N.T., Hong Kong Special Administrative Region, People's Republic of China
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Kevin Yum
eDepartment of Biochemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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Long M. Luu
aDepartment of Chemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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Lauren D. Hagler
aDepartment of Chemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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Julio F. Serrano
aDepartment of Chemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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H. Y. Edwin Chan
fLaboratory of Drosophila Research, School of Life Sciences, The Chinese University of Hong Kong, Shatin N.T., Hong Kong Special Administrative Region, People's Republic of China
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  • ORCID record for H. Y. Edwin Chan
Auinash Kalsotra
eDepartment of Biochemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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  • For correspondence: sczimmer@illinois.edu kalsotra@illinois.edu
Steven C. Zimmerman
aDepartment of Chemistry, University of Illinois at Urbana–Champaign, Urbana, IL 61801;
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  • ORCID record for Steven C. Zimmerman
  • For correspondence: sczimmer@illinois.edu kalsotra@illinois.edu
  1. Edited by Jennifer M. Heemstra, Emory University, and accepted by Editorial Board Member Thomas E. Mallouk March 18, 2019 (received for review December 6, 2018)

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Significance

Multivalent ligands have tremendous potential as therapeutic agents; however, their efficacy is limited by delivery issues, poor cell permeability, and toxicity. We report here a strategy wherein multivalent ligands are designed to be intrinsically cell-penetrating, allowing them to target the expanded trinucleotide repeat sequences of DNA and RNA that cause myotonic dystrophy type 1 (DM1). The multivalent ligand studied shows cell permeability and low toxicity both in cells and in mice. Importantly, the ligand reduced or eliminated DM1 defects in DM1 cells and in vivo, validating the multivalent strategy. The approach should be broadly applicable to other repeat expansion diseases and to any multivalent oligomeric therapeutic agent whose activity can accommodate structural elements that mimic cell-penetrating peptides.

Abstract

Developing highly active, multivalent ligands as therapeutic agents is challenging because of delivery issues, limited cell permeability, and toxicity. Here, we report intrinsically cell-penetrating multivalent ligands that target the trinucleotide repeat DNA and RNA in myotonic dystrophy type 1 (DM1), interrupting the disease progression in two ways. The oligomeric ligands are designed based on the repetitive structure of the target with recognition moieties alternating with bisamidinium groove binders to provide an amphiphilic and polycationic structure, mimicking cell-penetrating peptides. Multiple biological studies suggested the success of our multivalency strategy. The designed oligomers maintained cell permeability and exhibited no apparent toxicity both in cells and in mice at working concentrations. Furthermore, the oligomers showed important activities in DM1 cells and in a DM1 liver mouse model, reducing or eliminating prominent DM1 features. Phenotypic recovery of the climbing defect in adult DM1 Drosophila was also observed. This design strategy should be applicable to other repeat expansion diseases and more generally to DNA/RNA-targeted therapeutics.

  • multivalent ligand
  • DNA/RNA-targeting therapeutics
  • cell-penetrating peptide mimic
  • myotonic dystrophy type 1
  • trinucleotide repeat expansion diseases

Footnotes

  • ↵1J.L. and Y.B. contributed equally to this work.

  • ↵2To whom correspondence may be addressed. Email: sczimmer{at}illinois.edu or kalsotra{at}illinois.edu.
  • Author contributions: J.L., Y.B., U.V.C., S.P., K.Y., L.M.L., L.D.H., H.Y.E.C., A.K., and S.C.Z. designed research; J.L., Y.B., U.V.C., S.P., K.Y., L.M.L., L.D.H., and J.F.S. performed research; J.L., U.V.C., S.P., L.D.H., J.F.S., H.Y.E.C., and A.K. analyzed data; and J.L., Y.B., L.D.H., H.Y.E.C., A.K., and S.C.Z. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission. J.M.H. is a guest editor invited by the Editorial Board.

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1820827116/-/DCSupplemental.

Published under the PNAS license.

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Intrinsically cell-penetrating multivalent and multitargeting ligands for myotonic dystrophy type 1
JuYeon Lee, Yugang Bai, Ullas V. Chembazhi, Shaohong Peng, Kevin Yum, Long M. Luu, Lauren D. Hagler, Julio F. Serrano, H. Y. Edwin Chan, Auinash Kalsotra, Steven C. Zimmerman
Proceedings of the National Academy of Sciences Apr 2019, 116 (18) 8709-8714; DOI: 10.1073/pnas.1820827116

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Intrinsically cell-penetrating multivalent and multitargeting ligands for myotonic dystrophy type 1
JuYeon Lee, Yugang Bai, Ullas V. Chembazhi, Shaohong Peng, Kevin Yum, Long M. Luu, Lauren D. Hagler, Julio F. Serrano, H. Y. Edwin Chan, Auinash Kalsotra, Steven C. Zimmerman
Proceedings of the National Academy of Sciences Apr 2019, 116 (18) 8709-8714; DOI: 10.1073/pnas.1820827116
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