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Research Article

The crystal structure of human microsomal triglyceride transfer protein

Ekaterina I. Biterova, View ORCID ProfileMichail N. Isupov, Ronan M. Keegan, Andrey A. Lebedev, Anil A. Sohail, Inam Liaqat, Heli I. Alanen, and Lloyd W. Ruddock
  1. aFaculty of Biochemistry and Molecular Medicine, University of Oulu, 90220 Oulu, Finland;
  2. bBiocenter Oulu, University of Oulu, 90014 Oulu, Finland;
  3. cHenry Wellcome Biocatalysis Centre, Biosciences, University of Exeter, EX4 4QD Exeter, United Kingdom;
  4. dResearch Complex at Harwell, Science and Technology Facilities Council Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom

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PNAS August 27, 2019 116 (35) 17251-17260; first published August 8, 2019; https://doi.org/10.1073/pnas.1903029116
Ekaterina I. Biterova
aFaculty of Biochemistry and Molecular Medicine, University of Oulu, 90220 Oulu, Finland;
bBiocenter Oulu, University of Oulu, 90014 Oulu, Finland;
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Michail N. Isupov
cHenry Wellcome Biocatalysis Centre, Biosciences, University of Exeter, EX4 4QD Exeter, United Kingdom;
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  • ORCID record for Michail N. Isupov
Ronan M. Keegan
dResearch Complex at Harwell, Science and Technology Facilities Council Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom
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Andrey A. Lebedev
dResearch Complex at Harwell, Science and Technology Facilities Council Rutherford Appleton Laboratory, Didcot OX11 0FA, United Kingdom
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Anil A. Sohail
aFaculty of Biochemistry and Molecular Medicine, University of Oulu, 90220 Oulu, Finland;
bBiocenter Oulu, University of Oulu, 90014 Oulu, Finland;
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Inam Liaqat
aFaculty of Biochemistry and Molecular Medicine, University of Oulu, 90220 Oulu, Finland;
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Heli I. Alanen
aFaculty of Biochemistry and Molecular Medicine, University of Oulu, 90220 Oulu, Finland;
bBiocenter Oulu, University of Oulu, 90014 Oulu, Finland;
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Lloyd W. Ruddock
aFaculty of Biochemistry and Molecular Medicine, University of Oulu, 90220 Oulu, Finland;
bBiocenter Oulu, University of Oulu, 90014 Oulu, Finland;
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  • For correspondence: lloyd.ruddock@oulu.fi
  1. Edited by Michael V. Airola, Stony Brook University, Stony Brook, NY, and accepted by Editorial Board Member Alan R. Fersht July 15, 2019 (received for review February 20, 2019)

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Significance

This study provides a structure for microsomal triglyceride transfer protein, a key protein in lipid metabolism and transport. Microsomal triglyceride transfer protein is linked to a human disease state, abetalipoproteinemia. The structure helps us to understand how this protein functions and gives a rationale for how previously reported mutations result in loss of function of the protein and hence, cause disease. The structure also provides a means for rational drug design to treat cardiovascular disease, hypercholesterolemia, and obesity. Microsomal triglyceride transfer protein is composed of 2 subunits. The β-subunit, protein disulfide isomerase (PDI), also acts independently as a protein folding catalyst. The structure that we present here gives insights into how PDI functions in protein folding.

Abstract

Microsomal triglyceride transfer protein (MTP) plays an essential role in lipid metabolism, especially in the biogenesis of very low-density lipoproteins and chylomicrons via the transfer of neutral lipids and the assembly of apoB-containing lipoproteins. Our understanding of the molecular mechanisms of MTP has been hindered by a lack of structural information of this heterodimeric complex comprising an MTPα subunit and a protein disulfide isomerase (PDI) β-subunit. The structure of MTP presented here gives important insights into the potential mechanisms of action of this essential lipid transfer molecule, structure-based rationale for previously reported disease-causing mutations, and a means for rational drug design against cardiovascular disease and obesity. In contrast to the previously reported structure of lipovitellin, which has a funnel-like lipid-binding cavity, the lipid-binding site is encompassed in a β-sandwich formed by 2 β-sheets from the C-terminal domain of MTPα. The lipid-binding cavity of MTPα is large enough to accommodate a single lipid. PDI independently has a major role in oxidative protein folding in the endoplasmic reticulum. Comparison of the mechanism of MTPα binding by PDI with previously published structures gives insights into large protein substrate binding by PDI and suggests that the previous structures of human PDI represent the “substrate-bound” and “free” states rather than differences arising from redox state.

  • X-ray crystallography
  • abetolipoproteinemia
  • hypercholesterolemia
  • lipid metabolism
  • protein disulfide isomerase

Footnotes

  • ↵1To whom correspondence may be addressed. Email: lloyd.ruddock{at}oulu.fi.
  • Author contributions: L.W.R. designed research; E.I.B., A.A.S., I.L., H.I.A., and L.W.R. performed research; E.I.B., M.N.I., R.M.K., A.A.L., A.A.S., and I.L. analyzed data; and E.I.B. and L.W.R. wrote the paper.

  • Conflict of interest statement: A patent for the production system used to make the protein for structural studies using sulfhydryl oxidases in the cytoplasm of Escherichia coli is held by the University of Oulu: Method for producing natively folded proteins in a prokaryotic host (patent no. 9238817; date of patent January 19, 2016; inventor: L.W.R.).

  • This article is a PNAS Direct Submission. M.V.A. is a guest editor invited by the Editorial Board.

  • Data deposition: The data have been deposited in the Protein Data Bank, www.wwpdb.org (PDB ID code 6I7S).

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1903029116/-/DCSupplemental.

  • Copyright © 2019 the Author(s). Published by PNAS.

This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

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The crystal structure of human microsomal triglyceride transfer protein
Ekaterina I. Biterova, Michail N. Isupov, Ronan M. Keegan, Andrey A. Lebedev, Anil A. Sohail, Inam Liaqat, Heli I. Alanen, Lloyd W. Ruddock
Proceedings of the National Academy of Sciences Aug 2019, 116 (35) 17251-17260; DOI: 10.1073/pnas.1903029116

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The crystal structure of human microsomal triglyceride transfer protein
Ekaterina I. Biterova, Michail N. Isupov, Ronan M. Keegan, Andrey A. Lebedev, Anil A. Sohail, Inam Liaqat, Heli I. Alanen, Lloyd W. Ruddock
Proceedings of the National Academy of Sciences Aug 2019, 116 (35) 17251-17260; DOI: 10.1073/pnas.1903029116
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