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Real-time 2-5A kinetics suggest that interferons β and λ evade global arrest of translation by RNase L

Alisha Chitrakar, Sneha Rath, Jesse Donovan, Kaitlin Demarest, Yize Li, Raghavendra Rao Sridhar, Susan R. Weiss, Sergei V. Kotenko, Ned S. Wingreen, and Alexei Korennykh
PNAS February 5, 2019 116 (6) 2103-2111; published ahead of print February 5, 2019 https://doi.org/10.1073/pnas.1818363116
Alisha Chitrakar
aDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544;
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Sneha Rath
aDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544;
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Jesse Donovan
aDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544;
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Kaitlin Demarest
aDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544;
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Yize Li
bDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104;
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  • ORCID record for Yize Li
Raghavendra Rao Sridhar
cDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103;dCenter for Immunity and Inflammation, Rutgers New Jersey Medical School, Newark, NJ 07103
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Susan R. Weiss
bDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104;
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Sergei V. Kotenko
cDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103;dCenter for Immunity and Inflammation, Rutgers New Jersey Medical School, Newark, NJ 07103
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Ned S. Wingreen
aDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544;
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Alexei Korennykh
aDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544;
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  • For correspondence: akorenny@princeton.edu
  1. Edited by Peter Walter, University of California, San Francisco, CA, and approved December 14, 2018 (received for review October 24, 2018)

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Significance

RNase L is a mammalian enzyme that can stop global protein synthesis during interferon (IFN) response. Cells must balance the need to make IFNs (which are proteins) with the risk of losing cell-wide translation due to RNase L. This balance can be achieved most simply if RNase L is activated late in the IFN response. However, by engineering a biosensor for the RNase L pathway, we show that RNase L activation actually precedes IFN synthesis. Furthermore, translation of IFN evades the action of RNase L. Our data suggest that RNase L facilitates a switch of protein synthesis from homeostasis to specific needs of innate immune signaling.

Abstract

Cells of all mammals recognize double-stranded RNA (dsRNA) as a foreign material. In response, they release interferons (IFNs) and activate a ubiquitously expressed pseudokinase/endoribonuclease RNase L. RNase L executes regulated RNA decay and halts global translation. Here, we developed a biosensor for 2′,5′-oligoadenylate (2-5A), the natural activator of RNase L. Using this biosensor, we found that 2-5A was acutely synthesized by cells in response to dsRNA sensing, which immediately triggered cellular RNA cleavage by RNase L and arrested host protein synthesis. However, translation-arrested cells still transcribed IFN-stimulated genes and secreted IFNs of types I and III (IFN-β and IFN-λ). Our data suggest that IFNs escape from the action of RNase L on translation. We propose that the 2-5A/RNase L pathway serves to rapidly and accurately suppress basal protein synthesis, preserving privileged production of defense proteins of the innate immune system.

  • interferon
  • translation reprogramming
  • 2-5A
  • RNase L
  • RNA decay

Footnotes

  • ↵1A.C. and S.R. contributed equally to this work.

  • ↵2To whom correspondence should be addressed. Email: akorenny{at}princeton.edu.
  • Author contributions: A.C., S.R., S.V.K., and A.K. designed research; A.C., S.R., J.D., K.D., and R.R.S. performed research; A.C., S.R., Y.L., R.R.S., S.R.W., and S.V.K. contributed new reagents/analytic tools; A.C., S.R., J.D., N.S.W., and A.K. analyzed data; and A.C., S.R., and A.K. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: The data reported in this paper have been deposited in the Gene Expression Omnibus (GEO) database, https://www.ncbi.nlm.nih.gov/geo (accession no. GSE120355).

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1818363116/-/DCSupplemental.

Published under the PNAS license.

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Real-time 2-5A kinetics suggest that interferons β and λ evade global arrest of translation by RNase L
Alisha Chitrakar, Sneha Rath, Jesse Donovan, Kaitlin Demarest, Yize Li, Raghavendra Rao Sridhar, Susan R. Weiss, Sergei V. Kotenko, Ned S. Wingreen, Alexei Korennykh
Proceedings of the National Academy of Sciences Feb 2019, 116 (6) 2103-2111; DOI: 10.1073/pnas.1818363116

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Real-time 2-5A kinetics suggest that interferons β and λ evade global arrest of translation by RNase L
Alisha Chitrakar, Sneha Rath, Jesse Donovan, Kaitlin Demarest, Yize Li, Raghavendra Rao Sridhar, Susan R. Weiss, Sergei V. Kotenko, Ned S. Wingreen, Alexei Korennykh
Proceedings of the National Academy of Sciences Feb 2019, 116 (6) 2103-2111; DOI: 10.1073/pnas.1818363116
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