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Research Article

A multiomic analysis of in situ coral–turf algal interactions

Ty N. F. Roach, Mark Little, View ORCID ProfileMilou G. I. Arts, Joel Huckeba, Andreas F. Haas, Emma E. George, Robert A. Quinn, View ORCID ProfileAna G. Cobián-Güemes, View ORCID ProfileDouglas S. Naliboff, View ORCID ProfileCynthia B. Silveira, Mark J. A. Vermeij, View ORCID ProfileLinda Wegley Kelly, Pieter C. Dorrestein, and Forest Rohwer
  1. aHawaiʻi Institute of Marine Biology, University of Hawaiʻi at Mānoa, Kāneʻohe, HI 96744;
  2. bBiosphere 2, University of Arizona, Oracle, AZ 85739;
  3. cDepartment of Biology, San Diego State University, San Diego, CA 92182;
  4. dViral Information Institute, San Diego State University, San Diego, CA 92182;
  5. eInstitute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE, Amsterdam, The Netherlands;
  6. fRoyal Netherlands Institute for Sea Research (NIOZ), Utrecht University, 1790 AB, Den Burg, Texel, The Netherlands;
  7. gDepartment of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE, Amsterdam, The Netherlands;
  8. hDepartment of Botany, University of British Columbia, Vancouver, BC, Canada V6T1Z4;
  9. iDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48823;
  10. jCaribbean Research and Management of Biodiversity (CARMABI), Willemstad, Curaçao;
  11. kCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093

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PNAS June 16, 2020 117 (24) 13588-13595; first published June 1, 2020; https://doi.org/10.1073/pnas.1915455117
Ty N. F. Roach
aHawaiʻi Institute of Marine Biology, University of Hawaiʻi at Mānoa, Kāneʻohe, HI 96744;
bBiosphere 2, University of Arizona, Oracle, AZ 85739;
cDepartment of Biology, San Diego State University, San Diego, CA 92182;
dViral Information Institute, San Diego State University, San Diego, CA 92182;
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  • For correspondence: smokinroachjr@gmail.com frohwer@gmail.com
Mark Little
cDepartment of Biology, San Diego State University, San Diego, CA 92182;
dViral Information Institute, San Diego State University, San Diego, CA 92182;
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Milou G. I. Arts
eInstitute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE, Amsterdam, The Netherlands;
fRoyal Netherlands Institute for Sea Research (NIOZ), Utrecht University, 1790 AB, Den Burg, Texel, The Netherlands;
hDepartment of Botany, University of British Columbia, Vancouver, BC, Canada V6T1Z4;
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  • ORCID record for Milou G. I. Arts
Joel Huckeba
eInstitute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE, Amsterdam, The Netherlands;
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Andreas F. Haas
fRoyal Netherlands Institute for Sea Research (NIOZ), Utrecht University, 1790 AB, Den Burg, Texel, The Netherlands;
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Emma E. George
hDepartment of Botany, University of British Columbia, Vancouver, BC, Canada V6T1Z4;
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Robert A. Quinn
iDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48823;
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Ana G. Cobián-Güemes
cDepartment of Biology, San Diego State University, San Diego, CA 92182;
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  • ORCID record for Ana G. Cobián-Güemes
Douglas S. Naliboff
cDepartment of Biology, San Diego State University, San Diego, CA 92182;
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  • ORCID record for Douglas S. Naliboff
Cynthia B. Silveira
cDepartment of Biology, San Diego State University, San Diego, CA 92182;
dViral Information Institute, San Diego State University, San Diego, CA 92182;
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  • ORCID record for Cynthia B. Silveira
Mark J. A. Vermeij
fRoyal Netherlands Institute for Sea Research (NIOZ), Utrecht University, 1790 AB, Den Burg, Texel, The Netherlands;
jCaribbean Research and Management of Biodiversity (CARMABI), Willemstad, Curaçao;
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Linda Wegley Kelly
cDepartment of Biology, San Diego State University, San Diego, CA 92182;
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  • ORCID record for Linda Wegley Kelly
Pieter C. Dorrestein
kCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093
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Forest Rohwer
cDepartment of Biology, San Diego State University, San Diego, CA 92182;
dViral Information Institute, San Diego State University, San Diego, CA 92182;
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  • For correspondence: smokinroachjr@gmail.com frohwer@gmail.com
  1. Edited by Nancy Knowlton, Smithsonian Institution, Washington, DC, and approved April 7, 2020 (received for review October 8, 2019)

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Article Information

vol. 117 no. 24 13588-13595
DOI: 
https://doi.org/10.1073/pnas.1915455117
PubMed: 
32482859

Published By: 
National Academy of Sciences
Print ISSN: 
0027-8424
Online ISSN: 
1091-6490
History: 
  • Published in issue June 16, 2020.
  • Published first June 1, 2020.

Article Versions

  • Previous version (June 1, 2020 - 12:06).
  • You are viewing the most recent version of this article.
Copyright & Usage: 
Copyright © 2020 the Author(s). Published by PNAS. This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

Author Information

  1. Ty N. F. Roacha,b,c,d,1,2,
  2. Mark Littlec,d,1,
  3. Milou G. I. Artse,f,g,
  4. Joel Huckebae,
  5. Andreas F. Haasf,
  6. Emma E. Georgeh,
  7. Robert A. Quinni,
  8. Ana G. Cobián-Güemesc,
  9. Douglas S. Naliboffc,
  10. Cynthia B. Silveirac,d,
  11. Mark J. A. Vermeijg,j,
  12. Linda Wegley Kellyc,
  13. Pieter C. Dorresteink, and
  14. Forest Rohwerc,d,2
  1. aHawaiʻi Institute of Marine Biology, University of Hawaiʻi at Mānoa, Kāneʻohe, HI 96744;
  2. bBiosphere 2, University of Arizona, Oracle, AZ 85739;
  3. cDepartment of Biology, San Diego State University, San Diego, CA 92182;
  4. dViral Information Institute, San Diego State University, San Diego, CA 92182;
  5. eInstitute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE, Amsterdam, The Netherlands;
  6. fRoyal Netherlands Institute for Sea Research (NIOZ), Utrecht University, 1790 AB, Den Burg, Texel, The Netherlands;
  7. gDepartment of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, 1090 GE, Amsterdam, The Netherlands;
  8. hDepartment of Botany, University of British Columbia, Vancouver, BC, Canada V6T1Z4;
  9. iDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48823;
  10. jCaribbean Research and Management of Biodiversity (CARMABI), Willemstad, Curaçao;
  11. kCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA 92093
  1. Edited by Nancy Knowlton, Smithsonian Institution, Washington, DC, and approved April 7, 2020 (received for review October 8, 2019)

Footnotes

  • ↵1T.N.F.R. and M.L. contributed equally to this work.

  • ↵2To whom correspondence may be addressed. Email: smokinroachjr{at}gmail.com or frohwer{at}gmail.com.
  • Author contributions: T.N.F.R., M.L., A.F.H., E.E.G., R.A.Q., C.B.S., M.J.A.V., L.W.K., and F.R. designed research; T.N.F.R., M.L., E.E.G., C.B.S., and M.J.A.V. performed research; T.N.F.R., M.L., M.G.I.A., R.A.Q., P.C.D., and F.R. contributed new reagents/analytic tools; T.N.F.R., M.L., M.G.I.A., J.H., A.F.H., E.E.G., R.A.Q., A.G.C.-G., D.S.N., L.W.K., and P.C.D. analyzed data; T.N.F.R. and M.L. wrote the paper; and M.G.I.A., J.H., A.F.H., E.E.G., R.A.Q., A.G.C.-G., D.S.N., C.B.S., M.J.A.V., L.W.K., and P.C.D. provided edited versions of the manuscript.

  • The authors declare no competing interest.

  • This article is a PNAS Direct Submission.

  • Data deposition: Metagenomic sequence data from this study has been deposited into the Sequence Read Archive, https://www.ncbi.nlm.nih.gov/sra (accession no. PRJNA597953).

  • This article contains supporting information online at https://www.pnas.org/lookup/suppl/doi:10.1073/pnas.1915455117/-/DCSupplemental.

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  • Metabolomic signatures of coral bleaching history
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    Nature Ecology & Evolution 2021 5 4
  • Genotype by environment interactions in coral bleaching
    Crawford Drury, Diego Lirman
    Proceedings of the Royal Society B: Biological Sciences 2021 288 1946
  • Three-Dimensional Molecular Cartography of the Caribbean Reef-Building Coral Orbicella faveolata
    Mark Little, Emma E. George, Milou G. I. Arts, Jade Shivak, Sean Benler, Joel Huckeba, Zachary A. Quinlan, Vittorio Boscaro, Benjamin Mueller, Ana Georgina Cobián Güemes, Maria Isabel Rojas, Brandie White, Daniel Petras, Cynthia B. Silveira, Andreas F. Haas, Linda Wegley Kelly, Mark J. A. Vermeij, Robert A. Quinn, Patrick J. Keeling, Pieter C. Dorrestein, Forest Rohwer, Ty N. F. Roach
    Frontiers in Marine Science 2021 8

Article usage

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May 2020042
Jun 20209942318660
Jul 202087330124
Aug 20205423996
Sep 202069716123
Oct 2020172282128
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Dec 20207820069
Total 2020154043111274
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A multiomic analysis of in situ coral–turf algal interactions
Ty N. F. Roach, Mark Little, Milou G. I. Arts, Joel Huckeba, Andreas F. Haas, Emma E. George, Robert A. Quinn, Ana G. Cobián-Güemes, Douglas S. Naliboff, Cynthia B. Silveira, Mark J. A. Vermeij, Linda Wegley Kelly, Pieter C. Dorrestein, Forest Rohwer
Proceedings of the National Academy of Sciences Jun 2020, 117 (24) 13588-13595; DOI: 10.1073/pnas.1915455117

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A multiomic analysis of in situ coral–turf algal interactions
Ty N. F. Roach, Mark Little, Milou G. I. Arts, Joel Huckeba, Andreas F. Haas, Emma E. George, Robert A. Quinn, Ana G. Cobián-Güemes, Douglas S. Naliboff, Cynthia B. Silveira, Mark J. A. Vermeij, Linda Wegley Kelly, Pieter C. Dorrestein, Forest Rohwer
Proceedings of the National Academy of Sciences Jun 2020, 117 (24) 13588-13595; DOI: 10.1073/pnas.1915455117
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Proceedings of the National Academy of Sciences: 117 (24)
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