Skip to main content
  • Submit
  • About
    • Editorial Board
    • PNAS Staff
    • FAQ
    • Accessibility Statement
    • Rights and Permissions
    • Site Map
  • Contact
  • Journal Club
  • Subscribe
    • Subscription Rates
    • Subscriptions FAQ
    • Open Access
    • Recommend PNAS to Your Librarian
  • Log in
  • My Cart

Main menu

  • Home
  • Articles
    • Current
    • Special Feature Articles - Most Recent
    • Special Features
    • Colloquia
    • Collected Articles
    • PNAS Classics
    • List of Issues
  • Front Matter
  • News
    • For the Press
    • This Week In PNAS
    • PNAS in the News
  • Podcasts
  • Authors
    • Information for Authors
    • Editorial and Journal Policies
    • Submission Procedures
    • Fees and Licenses
  • Submit
  • About
    • Editorial Board
    • PNAS Staff
    • FAQ
    • Accessibility Statement
    • Rights and Permissions
    • Site Map
  • Contact
  • Journal Club
  • Subscribe
    • Subscription Rates
    • Subscriptions FAQ
    • Open Access
    • Recommend PNAS to Your Librarian

User menu

  • Log in
  • My Cart

Search

  • Advanced search
Home
Home

Advanced Search

  • Home
  • Articles
    • Current
    • Special Feature Articles - Most Recent
    • Special Features
    • Colloquia
    • Collected Articles
    • PNAS Classics
    • List of Issues
  • Front Matter
  • News
    • For the Press
    • This Week In PNAS
    • PNAS in the News
  • Podcasts
  • Authors
    • Information for Authors
    • Editorial and Journal Policies
    • Submission Procedures
    • Fees and Licenses

New Research In

Physical Sciences

Featured Portals

  • Physics
  • Chemistry
  • Sustainability Science

Articles by Topic

  • Applied Mathematics
  • Applied Physical Sciences
  • Astronomy
  • Computer Sciences
  • Earth, Atmospheric, and Planetary Sciences
  • Engineering
  • Environmental Sciences
  • Mathematics
  • Statistics

Social Sciences

Featured Portals

  • Anthropology
  • Sustainability Science

Articles by Topic

  • Economic Sciences
  • Environmental Sciences
  • Political Sciences
  • Psychological and Cognitive Sciences
  • Social Sciences

Biological Sciences

Featured Portals

  • Sustainability Science

Articles by Topic

  • Agricultural Sciences
  • Anthropology
  • Applied Biological Sciences
  • Biochemistry
  • Biophysics and Computational Biology
  • Cell Biology
  • Developmental Biology
  • Ecology
  • Environmental Sciences
  • Evolution
  • Genetics
  • Immunology and Inflammation
  • Medical Sciences
  • Microbiology
  • Neuroscience
  • Pharmacology
  • Physiology
  • Plant Biology
  • Population Biology
  • Psychological and Cognitive Sciences
  • Sustainability Science
  • Systems Biology
Research Article

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens

Alexei I. Slesarev, Katja V. Mezhevaya, Kira S. Makarova, Nikolai N. Polushin, Olga V. Shcherbinina, Vera V. Shakhova, Galina I. Belova, L. Aravind, Darren A. Natale, Igor B. Rogozin, Roman L. Tatusov, Yuri I. Wolf, Karl O. Stetter, Andrei G. Malykh, Eugene V. Koonin, and Sergei A. Kozyavkin
PNAS April 2, 2002 99 (7) 4644-4649; https://doi.org/10.1073/pnas.032671499
Alexei I. Slesarev
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Katja V. Mezhevaya
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Kira S. Makarova
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nikolai N. Polushin
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Olga V. Shcherbinina
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Vera V. Shakhova
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Galina I. Belova
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
L. Aravind
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Darren A. Natale
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Igor B. Rogozin
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Roman L. Tatusov
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Yuri I. Wolf
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Karl O. Stetter
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Andrei G. Malykh
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Eugene V. Koonin
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sergei A. Kozyavkin
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  1. Communicated by Dieter Söll, Yale University, New Haven, CT (received for review December 3, 2001)

  • Article
  • Figures & SI
  • Info & Metrics
  • PDF
Loading

Online Impact

 

Article Information

vol. 99 no. 7 4644-4649
DOI: 
https://doi.org/10.1073/pnas.032671499
PubMed: 
11930014

Published By: 
National Academy of Sciences
Print ISSN: 
0027-8424
Online ISSN: 
1091-6490
History: 
  • Received December 3, 2001
  • Accepted December 14, 2001
  • Published April 2, 2002.

Copyright & Usage: 
Copyright © 2002, The National Academy of Sciences

Author Information

  1. Alexei I. Slesarev*†‡,
  2. Katja V. Mezhevaya*,
  3. Kira S. Makarova§,
  4. Nikolai N. Polushin*,
  5. Olga V. Shcherbinina*,
  6. Vera V. Shakhova*,
  7. Galina I. Belova‡,
  8. L. Aravind§,
  9. Darren A. Natale§,
  10. Igor B. Rogozin§,
  11. Roman L. Tatusov§,
  12. Yuri I. Wolf§,
  13. Karl O. Stetter¶,
  14. Andrei G. Malykh*,
  15. Eugene V. Koonin§, and
  16. Sergei A. Kozyavkin*
  1. *Fidelity Systems, Gaithersburg, MD 20879: §National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894; ‡M. M. Shemyakin and Yu. A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow 117871, Russia; and ¶Department of Microbiology, University of Regensburg, Regensburg, D-93053, Germany
  1. Communicated by Dieter Söll, Yale University, New Haven, CT (received for review December 3, 2001)

Footnotes

    • ↵† To whom reprint requests should be addressed. E-mail: alex{at}fidelitysystems.com.

    • Data deposition: The sequence reported in this paper has been deposited in the GenBank database (accession no. AE009439).

    Cited By...

    • 216 Citations
    • 194 Citations
    • Google Scholar

    This article has been cited by the following articles in journals that are participating in Crossref Cited-by Linking.

    • Comparative genomics of the lactic acid bacteria
      K. Makarova, A. Slesarev, Y. Wolf, A. Sorokin, B. Mirkin, E. Koonin, A. Pavlov, N. Pavlova, V. Karamychev, N. Polouchine, V. Shakhova, I. Grigoriev, Y. Lou, D. Rohksar, S. Lucas, K. Huang, D. M. Goodstein, T. Hawkins, V. Plengvidhya, D. Welker, J. Hughes, Y. Goh, A. Benson, K. Baldwin, J.- H. Lee, I. Diaz-Muniz, B. Dosti, V. Smeianov, W. Wechter, R. Barabote, G. Lorca, E. Altermann, R. Barrangou, B. Ganesan, Y. Xie, H. Rawsthorne, D. Tamir, C. Parker, F. Breidt, J. Broadbent, R. Hutkins, D. O'Sullivan, J. Steele, G. Unlu, M. Saier, T. Klaenhammer, P. Richardson, S. Kozyavkin, B. Weimer, D. Mills
      Proceedings of the National Academy of Sciences 2006 103 42
    • Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
      Céline Brochier-Armanet, Bastien Boussau, Simonetta Gribaldo, Patrick Forterre
      Nature Reviews Microbiology 2008 6 3
    • Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea
      Yuchen Liu, William B. Whitman
      Annals of the New York Academy of Sciences 2008 1125 1
    • The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode
      Jeremy Foster, Mehul Ganatra, Ibrahim Kamal, Jennifer Ware, Kira Makarova, Natalia Ivanova, Anamitra Bhattacharyya, Vinayak Kapatral, Sanjay Kumar, Janos Posfai, Tamas Vincze, Jessica Ingram, Laurie Moran, Alla Lapidus, Marina Omelchenko, Nikos Kyrpides, Elodie Ghedin, Shiliang Wang, Eugene Goltsman, Victor Joukov, Olga Ostrovskaya, Kiryl Tsukerman, Mikhail Mazur, Donald Comb, Eugene Koonin, Barton Slatko, Nancy A. Moran
      PLoS Biology 2005 3 4
    • The genome sequence of the extreme thermophile Thermus thermophilus
      Anke Henne, Holger Brüggemann, Carsten Raasch, Arnim Wiezer, Thomas Hartsch, Heiko Liesegang, Andre Johann, Tanja Lienard, Olivia Gohl, Rosa Martinez-Arias, Carsten Jacobi, Vytaute Starkuviene, Silke Schlenczeck, Silke Dencker, Robert Huber, Hans-Peter Klenk, Wilfried Kramer, Rainer Merkl, Gerhard Gottschalk, Hans-Joachim Fritz
      Nature Biotechnology 2004 22 5
    • Hydrogenases from Methanogenic Archaea, Nickel, a Novel Cofactor, and H2Storage
      Rudolf K. Thauer, Anne-Kristin Kaster, Meike Goenrich, Michael Schick, Takeshi Hiromoto, Seigo Shima
      Annual Review of Biochemistry 2010 79 1
    • Genome trees and the tree of life
      Yuri I. Wolf, Igor B. Rogozin, Nick V. Grishin, Eugene V. Koonin
      Trends in Genetics 2002 18 9
    • Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus capsulatus (Bath)
      Naomi Ward, Øivind Larsen, James Sakwa, Live Bruseth, Hoda Khouri, A. Scott Durkin, George Dimitrov, Lingxia Jiang, David Scanlan, Katherine H Kang, Matt Lewis, Karen E Nelson, Barbara Methé, Martin Wu, John F Heidelberg, Ian T Paulsen, Derrick Fouts, Jacques Ravel, Hervé Tettelin, Qinghu Ren, Tim Read, Robert T DeBoy, Rekha Seshadri, Steven L Salzberg, Harald B Jensen, Nils Kåre Birkeland, William C Nelson, Robert J Dodson, Svenn H Grindhaug, Ingeborg Holt, Ingvar Eidhammer, Inge Jonasen, Susan Vanaken, Terry Utterback, Tamara V Feldblyum, Claire M Fraser, Johan R Lillehaug, Jonathan A Eisen, Nancy A. Moran
      PLoS Biology 2004 2 10
    • A third type of hydrogenase catalyzing H2 activation
      Seigo Shima, Rudolf K. Thauer
      The Chemical Record 2007 7 1
    • Microbial community genomics in the ocean
      Edward F. DeLong
      Nature Reviews Microbiology 2005 3 6
    • Nitrate reduction and the nitrogen cycle in archaea
      Purificación Cabello, M. Dolores Roldán, Conrado Moreno-Vivián
      Microbiology 2004 150 11
    • Energy Conservation in Acetogenic Bacteria
      Volker Müller
      Applied and Environmental Microbiology 2003 69 11
    • The Genome Sequence of Methanosphaera stadtmanae Reveals Why This Human Intestinal Archaeon Is Restricted to Methanol and H2 for Methane Formation and ATP Synthesis
      Wolfgang F. Fricke, Henning Seedorf, Anke Henne, Markus Krüer, Heiko Liesegang, Reiner Hedderich, Gerhard Gottschalk, Rudolf K. Thauer
      Journal of Bacteriology 2006 188 2
    • Characterization of the Nodularin Synthetase Gene Cluster and Proposed Theory of the Evolution of Cyanobacterial Hepatotoxins
      Michelle C. Moffitt, Brett A. Neilan
      Applied and Environmental Microbiology 2004 70 11
    • Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis
      E. L. Hendrickson, R. Kaul, Y. Zhou, D. Bovee, P. Chapman, J. Chung, E. Conway de Macario, J. A. Dodsworth, W. Gillett, D. E. Graham, M. Hackett, A. K. Haydock, A. Kang, M. L. Land, R. Levy, T. J. Lie, T. A. Major, B. C. Moore, I. Porat, A. Palmeiri, G. Rouse, C. Saenphimmachak, D. Söll, S. Van Dien, T. Wang, W. B. Whitman, Q. Xia, Y. Zhang, F. W. Larimer, M. V. Olson, J. A. Leigh
      Journal of Bacteriology 2004 186 20
    • The origin and evolution of Archaea: a state of the art
      Simonetta Gribaldo, Celine Brochier-Armanet
      Philosophical Transactions of the Royal Society B: Biological Sciences 2006 361 1470
    • Identification and characterization of phosphoseryl-tRNA[Ser]Sec kinase
      B. A. Carlson, X.-M. Xu, G. V. Kryukov, M. Rao, M. J. Berry, V. N. Gladyshev, D. L. Hatfield
      Proceedings of the National Academy of Sciences 2004 101 35
    • Evidence of a Large Novel Gene Pool Associated with Prokaryotic Genomic Islands
      William W. L Hsiao, Korine Ung, Dana Aeschliman, Jenny Bryan, B. Brett Finlay, Fiona S. L Brinkman, Claire Fraser
      PLoS Genetics 2005 1 5
    • GENOME TREES AND THE NATURE OF GENOME EVOLUTION
      Berend Snel, Martijn A. Huynen, Bas E. Dutilh
      Annual Review of Microbiology 2005 59 1
    • The evolution of A-, F-, and V-type ATP synthases and ATPases: reversals in function and changes in the H+/ATP coupling ratio
      Richard L. Cross, Volker Müller
      FEBS Letters 2004 576 1-2
    • Modular architecture of the T4 phage superfamily: A conserved core genome and a plastic periphery
      André M. Comeau, Claire Bertrand, Andrei Letarov, Françoise Tétart, H.M. Krisch
      Virology 2007 362 2
    • Energy-Converting [NiFe] Hydrogenases: More than Just H<sub>2</sub> Activation
      Reiner Hedderich, Lucia Forzi
      Journal of Molecular Microbiology and Biotechnology 2005 10 2-4
    • From one amino acid to another: tRNA-dependent amino acid biosynthesis
      K. Sheppard, J. Yuan, M. J. Hohn, B. Jester, K. M. Devine, D. Soll
      Nucleic Acids Research 2008 36 6
    • Genome sequence of the deep-sea  -proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy
      S. Hou, J. H. Saw, K. S. Lee, T. A. Freitas, C. Belisle, Y. Kawarabayasi, S. P. Donachie, A. Pikina, M. Y. Galperin, E. V. Koonin, K. S. Makarova, M. V. Omelchenko, A. Sorokin, Y. I. Wolf, Q. X. Li, Y. S. Keum, S. Campbell, J. Denery, S.-I. Aizawa, S. Shibata, A. Malahoff, M. Alam
      Proceedings of the National Academy of Sciences 2004 101 52
    • Structural divergence of the rotary ATPases
      Stephen P. Muench, John Trinick, Michael A. Harrison
      Quarterly Reviews of Biophysics 2011 44 3
    • Hydrothermal Focusing of Chemical and Chemiosmotic Energy, Supported by Delivery of Catalytic Fe, Ni, Mo/W, Co, S and Se, Forced Life to Emerge
      Wolfgang Nitschke, Michael J. Russell
      Journal of Molecular Evolution 2009 69 5
    • Genome Sequence of a Nephritogenic and Highly Transformable M49 Strain of Streptococcus pyogenes
      W. Michael McShan, Joseph J. Ferretti, Tadahiro Karasawa, Alexander N. Suvorov, Shaoping Lin, Biafang Qin, Honggui Jia, Steve Kenton, Fares Najar, Hongmin Wu, Julie Scott, Bruce A. Roe, Dragutin J. Savic
      Journal of Bacteriology 2008 190 23
    • Streamlining and Large Ancestral Genomes in Archaea Inferred with a Phylogenetic Birth-and-Death Model
      M. Csuros, I. Miklos
      Molecular Biology and Evolution 2009 26 9
    • Protein–Sol: a web tool for predicting protein solubility from sequence
      Max Hebditch, M Alejandro Carballo-Amador, Spyros Charonis, Robin Curtis, Jim Warwicker, Alfonso Valencia
      Bioinformatics 2017 33 19
    • Genetic and functional properties of uncultivated thermophilic crenarchaeotes from a subsurface gold mine as revealed by analysis of genome fragments
      Takuro Nunoura, Hisako Hirayama, Hideto Takami, Hanako Oida, Shinro Nishi, Shigeru Shimamura, Yohey Suzuki, Fumio Inagaki, Ken Takai, Kenneth H. Nealson, Koki Horikoshi
      Environmental Microbiology 2005 7 12
    • Recent developments in the optimization of thermostable DNA polymerases for efficient applications
      Andrey R. Pavlov, Nadejda V. Pavlova, Sergei A. Kozyavkin, Alexei I. Slesarev
      Trends in Biotechnology 2004 22 5
    • Quantification of mcrA by fluorescent PCR in methanogenic and methanotrophic microbial communities
      Takuro Nunoura, Hanako Oida, Junichi Miyazaki, Ai Miyashita, Hiroyuki Imachi, Ken Takai
      FEMS Microbiology Ecology 2008 64 2
    • Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales
      Kira Makarova, Yuri Wolf, Eugene Koonin
      Life 2015 5 1
    • ATP synthases from archaea: The beauty of a molecular motor
      Gerhard Grüber, Malathy Sony Subramanian Manimekalai, Florian Mayer, Volker Müller
      Biochimica et Biophysica Acta (BBA) - Bioenergetics 2014 1837 6
    • Evolution of the Archaea
      Patrick Forterre, Celine Brochier, Hervé Philippe
      Theoretical Population Biology 2002 61 4
    • Bioenergetics
      Uwe Deppenmeier, Volker Müller
      2008 45
    • Entropic Stabilization of Proteins and Its Proteomic Consequences
      Igor N Berezovsky, William W Chen, Paul J Choi, Eugene I Shakhnovich, Jeffery Skolnick
      PLoS Computational Biology 2005 1 4
    • Diversity of Thermophilic Anaerobes
      Isaac D. Wagner, Juergen Wiegel
      Annals of the New York Academy of Sciences 2008 1125 1
    • Plasticity of the Gene Functions for DNA Replication in the T4-like Phages
      Vasiliy M. Petrov, James M. Nolan, Claire Bertrand, Dawn Levy, Carine Desplats, H.M. Krisch, Jim D. Karam
      Journal of Molecular Biology 2006 361 1
    • Insights into the genomes of archaea mediating the anaerobic oxidation of methane
      Anke Meyerdierks, Michael Kube, Thierry Lombardot, Katrin Knittel, Margarete Bauer, Frank Oliver Glöckner, Richard Reinhardt, Rudolf Amann
      Environmental Microbiology 2005 7 12
    • Adaptations of anaerobic archaea to life under extreme energy limitation
      Florian Mayer, Volker Müller
      FEMS Microbiology Reviews 2014 38 3
    • Three-dimensional Structure of A1A0 ATP Synthase from the Hyperthermophilic Archaeon Pyrococcus furiosus by Electron Microscopy
      Janet Vonck, Kim Y. Pisa, Nina Morgner, Bernhard Brutschy, Volker Müller
      Journal of Biological Chemistry 2009 284 15
    • The Prokaryotes
      Reiner Hedderich, William B. Whitman
      2006
    • Cysteine Activation Is an Inherent in Vitro Property of Prolyl-tRNA Synthetases
      Ivan Ahel, Constantinos Stathopoulos, Alexandre Ambrogelly, Anselm Sauerwald, Helen Toogood, Thomas Hartsch, Dieter Söll
      Journal of Biological Chemistry 2002 277 38
    • Transfer RNA paralogs: evidence for genetic code-amino acid biosynthesis coevolution and an archaeal root of life
      Hong Xue, Ka-Lok Tong, Christian Marck, Henri Grosjean, J.Tze-Fei Wong
      Gene 2003 310
    • Selenoproteins in Archaea and Gram-positive bacteria
      Tilmann Stock, Michael Rother
      Biochimica et Biophysica Acta (BBA) - General Subjects 2009 1790 11
    • PROKARYOTE PHYLOGENY WITHOUT SEQUENCE ALIGNMENT: FROM AVOIDANCE SIGNATURE TO COMPOSITION DISTANCE
      BAILIN HAO, JI QI
      Journal of Bioinformatics and Computational Biology 2004 02 01
    • Thermus thermophilus Bacteriophage ϕYS40 Genome and Proteomic Characterization of Virions
      Tatyana Naryshkina, Jing Liu, Laurence Florens, Selene K. Swanson, Andrey R. Pavlov, Nadejda V. Pavlova, Ross Inman, Leonid Minakhin, Sergei A. Kozyavkin, Michael Washburn, Arcady Mushegian, Konstantin Severinov
      Journal of Molecular Biology 2006 364 4
    • Potential genomic determinants of hyperthermophily
      Kira S. Makarova, Yuri I. Wolf, Eugene V. Koonin
      Trends in Genetics 2003 19 4
    • A Cytidine Deaminase Edits C to U in Transfer RNAs in Archaea
      L. Randau, B. J. Stanley, A. Kohlway, S. Mechta, Y. Xiong, D. Soll
      Science 2009 324 5927
    • A New Type of Sulfite Reductase, a Novel Coenzyme F420-dependent Enzyme, from the Methanarchaeon Methanocaldococcus jannaschii*
      Eric F. Johnson, Biswarup Mukhopadhyay
      Journal of Biological Chemistry 2005 280 46
    • The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements
      M. Krupovic, S. Gribaldo, D. H. Bamford, P. Forterre
      Molecular Biology and Evolution 2010 27 12
    • Polysaccharide Degradation and Synthesis by Extremely Thermophilic Anaerobes
      Amy L. VanFossen, Derrick L. Lewis, Jason D. Nichols, Robert M. Kelly
      Annals of the New York Academy of Sciences 2008 1125 1
    • Genome and Proteome of Campylobacter jejuni Bacteriophage NCTC 12673
      Andrew M. Kropinski, Denis Arutyunov, Mary Foss, Anna Cunningham, Wen Ding, Amit Singh, Andrey R. Pavlov, Matthew Henry, Stephane Evoy, John Kelly, Christine M. Szymanski
      Applied and Environmental Microbiology 2011 77 23
    • Spectrin repeat proteins in the nucleus
      Kevin G. Young, Rashmi Kothary
      BioEssays 2005 27 2
    • Genome Sequence of a Mesophilic Hydrogenotrophic Methanogen Methanocella paludicola, the First Cultivated Representative of the Order Methanocellales
      Sanae Sakai, Yoshihiro Takaki, Shigeru Shimamura, Mitsuo Sekine, Takahisa Tajima, Hiroki Kosugi, Natsuko Ichikawa, Eiji Tasumi, Aiko T. Hiraki, Ai Shimizu, Yumiko Kato, Rika Nishiko, Koji Mori, Nobuyuki Fujita, Hiroyuki Imachi, Ken Takai, Lennart Randau
      PLoS ONE 2011 6 7
    • Methods in Methane Metabolism, Part A
      Felipe B. Sarmiento, John A. Leigh, William B. Whitman
      2011 494
    • Purification, Overproduction, and Partial Characterization of β-RFAP Synthase, a Key Enzyme in the Methanopterin Biosynthesis Pathway†
      Joseph W. Scott, Madeline E. Rasche
      Journal of Bacteriology 2002 184 16
    • The Geobacillus stearothermophilus V iscS Gene, Encoding Cysteine Desulfurase, Confers Resistance to Potassium Tellurite in Escherichia coli K-12
      Juan C. Tantaleán, Manuel A. Araya, Claudia P. Saavedra, Derie E. Fuentes, José M. Pérez, Iván L. Calderón, Philip Youderian, Claudio C. Vásquez
      Journal of Bacteriology 2003 185 19
    • Hydrogenases of the Model Hyperthermophiles
      Francis E. Jenney, Michael W. W. Adams
      Annals of the New York Academy of Sciences 2008 1125 1
    • Methanogen genomics to discover targets for methane mitigation technologies and options for alternative H2 utilisation in the rumen
      Graeme Attwood, Christopher McSweeney
      Australian Journal of Experimental Agriculture 2008 48 2
    • Selenocysteine, Pyrrolysine, and the Unique Energy Metabolism of Methanogenic Archaea
      Michael Rother, Joseph A. Krzycki
      Archaea 2010 2010
    • Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota
      Luke J. McKay, Mensur Dlakić, Matthew W. Fields, Tom O. Delmont, A. Murat Eren, Zackary J. Jay, Korinne B. Klingelsmith, Douglas B. Rusch, William P. Inskeep
      Nature Microbiology 2019 4 4
    • RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri
      Andreas A. H. Su, Vanessa Tripp, Lennart Randau
      Nucleic Acids Research 2013 41 12
    • An uncultivated crenarchaeota contains functional bacteriochlorophyll a synthase
      Jun Meng, Fengping Wang, Feng Wang, Yanping Zheng, Xiaotong Peng, Huaiyang Zhou, Xiang Xiao
      The ISME Journal 2009 3 1
    • Bioenergetics of archaea: Ancient energy conserving mechanisms developed in the early history of life
      Kim Lewalter, Volker Müller
      Biochimica et Biophysica Acta (BBA) - Bioenergetics 2006 1757 5-6
    • Sequence Analysis of Leuconostoc mesenteroides Bacteriophage Φ1-A4 Isolated from an Industrial Vegetable Fermentation
      Z. Lu, E. Altermann, F. Breidt, S. Kozyavkin
      Applied and Environmental Microbiology 2010 76 6
    • Structure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases
      Bhupesh Taneja, Asmita Patel, Alexei Slesarev, Alfonso Mondragón
      The EMBO Journal 2006 25 2
    • Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant
      Irena Maus, Daniel Wibberg, Robbin Stantscheff, Katharina Cibis, Felix-Gregor Eikmeyer, Helmut König, Alfred Pühler, Andreas Schlüter
      Journal of Biotechnology 2013 168 4
    • The Prokaryotes
      Edward Schwartz, Johannes Fritsch, Bärbel Friedrich
      2013
    • Life on Earth. Extremophiles Continue to Move the Goal Posts
      Amalie A. H. Pakchung, Philippa J. L. Simpson, Rachel Codd
      Environmental Chemistry 2006 3 2
    • Polyphasic evidence delineating the root of life and roots of biological domains
      J. Tze-Fei Wong, Jianhuan Chen, Wai-Kin Mat, Siu-Kin Ng, Hong Xue
      Gene 2007 403 1-2
    • Crystal structure of Arabidopsis glutamyl-tRNA reductase in complex with its stimulator protein
      A. Zhao, Y. Fang, X. Chen, S. Zhao, W. Dong, Y. Lin, W. Gong, L. Liu
      Proceedings of the National Academy of Sciences 2014 111 18
    • Congruence of evidence for a Methanopyrus-proximal root of life based on transfer RNA and aminoacyl-tRNA synthetase genes
      Hong Xue, Siu-Kin Ng, Ka-Lok Tong, J.Tze-Fei Wong
      Gene 2005 360 2
    • Profile-profile comparisons by COMPASS predict intricate homologies between protein families
      Ruslan I. Sadreyev, David Baker, Nick V. Grishin
      Protein Science 2009 12 10
    • The Euryarchaeota, Nature's Medium for Engineering of Single-stranded DNA-binding Proteins
      Justin B. Robbins, Mary C. McKinney, Claudia E. Guzman, Binjon Sriratana, Sorel Fitz-Gibbon, Taekjip Ha, Isaac K.O. Cann
      Journal of Biological Chemistry 2005 280 15
    • The Origin of Eukaryotes Is Suggested as the Symbiosis of Pyrococcus into γ-Proteobacteria by Phylogenetic Tree Based on Gene Content
      Tokumasa Horiike, Kazuo Hamada, Daisuke Miyata, Takao Shinozawa
      Journal of Molecular Evolution 2004 59 5
    • The structural basis of cysteine aminoacylation of tRNAPro by prolyl-tRNA synthetases
      S. Kamtekar, W. D. Kennedy, J. Wang, C. Stathopoulos, D. Soll, T. A. Steitz
      Proceedings of the National Academy of Sciences 2003 100 4
    • Viruses of hyperthermophilic Archaea
      Jamie C. Snyder, Kenneth Stedman, George Rice, Blake Wiedenheft, Josh Spuhler, Mark J. Young
      Research in Microbiology 2003 154 7
    • Coevolution Theory of the Genetic Code at Age Forty: Pathway to Translation and Synthetic Life
      J. Wong, Siu-Kin Ng, Wai-Kin Mat, Taobo Hu, Hong Xue
      Life 2016 6 1
    • The Prokaryotes
      Edward Schwartz, Bärbel Friedrich
      2006
    • A conserved mechanism for replication origin recognition and binding in archaea
      Alan I. Majerník, James P. J. Chong
      Biochemical Journal 2008 409 2
    • Archaea
      James G. Ferry, Kyle A. Kastead
      2014
    • DNA topoisomerase V: a new fold of mysterious origin
      Patrick Forterre
      Trends in Biotechnology 2006 24 6
    • Identification and Functional Verification of Archaeal-Type Phosphoenolpyruvate Carboxylase, a Missing Link in Archaeal Central Carbohydrate Metabolism
      Thijs J. G. Ettema, Kira S. Makarova, Gera L. Jellema, Hinco J. Gierman, Eugene V. Koonin, Martijn A. Huynen, Willem M. de Vos, John van der Oost
      Journal of Bacteriology 2004 186 22
    • Evolutionary Divergence of the Archaeal Aspartyl-tRNA Synthetases into Discriminating and Nondiscriminating Forms
      Debra Tumbula-Hansen, Liang Feng, Helen Toogood, Karl O. Stetter, Dieter Söll
      Journal of Biological Chemistry 2002 277 40
    • Genetic Manipulations of the Hyperthermophilic Piezophilic Archaeon Thermococcus barophilus
      Axel Thiel, Grégoire Michoud, Yann Moalic, Didier Flament, Mohamed Jebbar, R. E. Parales
      Applied and Environmental Microbiology 2014 80 7
    • Geobiological analysis using whole genome-based tree building applied to the Bacteria, Archaea, and Eukarya
      Christopher H. House, Bruce Runnegar, Sorel T. Fitz-Gibbon
      Geobiology 2003 1 1
    • Lysine-2,3-Aminomutase and β-Lysine Acetyltransferase Genes of Methanogenic Archaea Are Salt Induced and Are Essential for the Biosynthesis of Nε-Acetyl-β-Lysine and Growth at High Salinity
      K. Pflüger, S. Baumann, G. Gottschalk, W. Lin, H. Santos, V. Müller
      Applied and Environmental Microbiology 2003 69 10
    • The Phosphoenolpyruvate Carboxylase from Methanothermobacter thermautotrophicus Has a Novel Structure
      Hiten M. Patel, Jessica L. Kraszewski, Biswarup Mukhopadhyay
      Journal of Bacteriology 2004 186 15
    • Amino acid modifications on tRNA†
      Jing Yuan, Kelly Sheppard, Dieter Söll
      Acta Biochimica et Biophysica Sinica 2008 40 7
    • Extra-chromosomal elements and the evolution of cellular DNA replication machineries
      Adam T. McGeoch, Stephen D. Bell
      Nature Reviews Molecular Cell Biology 2008 9 7
    • A-to-I and C-to-U editing within transfer RNAs
      A. A. H. Su, L. Randau
      Biochemistry (Moscow) 2011 76 8
    • ABC Transporter for Corrinoids in Halobacterium sp. Strain NRC-1
      Jesse D. Woodson, April A. Reynolds, Jorge C. Escalante-Semerena
      Journal of Bacteriology 2005 187 17
    • Activity and diversity of haloalkaliphilic methanogens in Central Asian soda lakes
      Vímac Nolla-Ardèvol, Marc Strous, Dimitry Y. Sorokin, Alexander Y. Merkel, Halina E. Tegetmeyer
      Journal of Biotechnology 2012 161 2
    • Archaea
      Arnulf Kletzin
      2014
    • Formaldehyde activating enzyme (Fae) and hexulose-6-phosphate synthase (Hps) in Methanosarcina barkeri: a possible function in ribose-5-phosphate biosynthesis
      Meike Goenrich, Rudolf K. Thauer, Hiroya Yurimoto, Nobuo Kato
      Archives of Microbiology 2005 184 1
    • Tetrahydrofolate-specific enzymes in Methanosarcina barkeri and growth dependence of this methanogenic archaeon on folic acid or p-aminobenzoic acid
      B�rbel Buchenau, Rudolf K. Thauer
      Archives of Microbiology 2004 182 4
    • Deciphering Primordial Cyanobacterial Genome Functions from Protein Network Analysis
      Arye Harel, Slim Karkar, Shu Cheng, Paul G. Falkowski, Debashish Bhattacharya
      Current Biology 2015 25 5
    • One-Carbon Metabolic Pathway Rewiring in Escherichia coli Reveals an Evolutionary Advantage of 10-Formyltetrahydrofolate Synthetase (Fhs) in Survival under Hypoxia
      Shivjee Sah, Srinivas Aluri, Kervin Rex, Umesh Varshney, P. de Boer
      Journal of Bacteriology 2015 197 4
    • Phylogenetic systematics of microorganisms inhabiting thermal environments
      A. V. Lebedinsky, N. A. Chernyh, E. A. Bonch-Osmolovskaya
      Biochemistry (Moscow) 2007 72 12
    • The A-type ATP synthase subunit K of Methanopyrus kandleri is deduced from its sequence to form a monomeric rotor comprising 13 hairpin domains
      Juke S. Lolkema, Egbert J. Boekema
      FEBS Letters 2003 543 1-3
    • Genetic structure of three fosmid-fragments encoding 16S rRNA genes of the Miscellaneous Crenarchaeotic Group (MCG): implications for physiology and evolution of marine sedimentary archaea
      Ping-Yi Li, Bin-Bin Xie, Xi-Ying Zhang, Qi-Long Qin, Hong-Yue Dang, Xu-Min Wang, Xiu-Lan Chen, Jun Yu, Yu-Zhong Zhang
      Environmental Microbiology 2012 14 2
    • Identification and Characterization of Human Archaemetzincin-1 and -2, Two Novel Members of a Family of Metalloproteases Widely Distributed in Archaea
      Araceli Díaz-Perales, Víctor Quesada, Juan R. Peinado, Alejandro P. Ugalde, Jesús Álvarez, María F. Suárez, F. Xavier Gomis-Rüth, Carlos López-Otín
      Journal of Biological Chemistry 2005 280 34
    • The Haloferax volcanii FtsY Homolog Is Critical for Haloarchaeal Growth but Does Not Require the A Domain
      Alex Haddad, R. Wesley Rose, Mechthild Pohlschröder
      Journal of Bacteriology 2005 187 12
    • The Prokaryotes
      Reiner Hedderich, William B. Whitman
      2013
    • A c Subunit with Four Transmembrane Helices and One Ion (Na+)-binding Site in an Archaeal ATP Synthase
      Florian Mayer, Vanessa Leone, Julian D. Langer, José D. Faraldo-Gómez, Volker Müller
      Journal of Biological Chemistry 2012 287 47
    • Characterization of a Novel Zinc-Containing, Lysine-Specific Aminopeptidase from the Hyperthermophilic Archaeon Pyrococcus furiosus
      Sherry V. Story, Claudia Shah, Francis E. Jenney, Michael W. W. Adams
      Journal of Bacteriology 2005 187 6
    • Subunit Interaction and Regulation of Activity through Terminal Domains of the Family D DNA Polymerase from Pyrococcus horikoshii
      Yulong Shen, Xiao-Feng Tang, Ikuo Matsui
      Journal of Biological Chemistry 2003 278 23
    • How an obscure archaeal gene inspired the discovery of selenocysteine biosynthesis in humans
      Dan Su, Michael J. Hohn, Sotiria Palioura, R. Lynn Sherrer, Jing Yuan, Dieter Söll, Patrick O'Donoghue
      IUBMB Life 2009 61 1
    • Discovering novel biology by in silico archaeology
      Thijs J. G. Ettema, Willem M. de Vos, John van der Oost
      Nature Reviews Microbiology 2005 3 11
    • Identification of pseudomurein cell wall binding domains
      Peter J. M. Steenbakkers, Wim J. Geerts, Nilgün A. Ayman-Oz, Jan T. Keltjens
      Molecular Microbiology 2006 62 6
    • Identifying natural substrates for chaperonins using a sequence-based approach
      George Stan, Bernard R. Brooks, George H. Lorimer, D. Thirumalai
      Protein Science 2009 14 1
    • Methanocaldococcus jannaschii Prolyl-tRNA Synthetase Charges tRNAPro with Cysteine
      Alexandre Ambrogelly, Ivan Ahel, Carla Polycarpo, Shipra Bunjun-Srihari, Bethany Krett, Clarisse Jacquin-Becker, Benfang Ruan, Caroline Köhrer, Constantinos Stathopoulos, Uttam L. RajBhandary, Dieter Söll
      Journal of Biological Chemistry 2002 277 38
    • An archaeal order with multiple minichromosome maintenance genes
      Alison D. Walters, James P. J. Chong
      Microbiology 2010 156 5
    • Localized melting of duplex DNA by Cdc6/Orc1 at the DNA replication origin in the hyperthermophilic archaeon Pyrococcus furiosus
      Fujihiko Matsunaga, Kie Takemura, Masaki Akita, Akinori Adachi, Takeshi Yamagami, Yoshizumi Ishino
      Extremophiles 2010 14 1
    • Physiology and Biochemistry of Extremophiles
      Garabed Antranikian, Ksenia Egorova
      2014
    • A single operon-encoded form of the acetyl-CoA decarbonylase/synthase multienzyme complex responsible for synthesis and cleavage of acetyl-CoA in Methanosarcina thermophila
      David A. Grahame, Simonida Gencic, Edward DeMoll
      Archives of Microbiology 2005 184 1
    • Cooperation between Catalytic and DNA Binding Domains Enhances Thermostability and Supports DNA Synthesis at Higher Temperatures by Thermostable DNA Polymerases
      Andrey R. Pavlov, Nadejda V. Pavlova, Sergei A. Kozyavkin, Alexei I. Slesarev
      Biochemistry 2012 51 10
    • Cysteinyl-tRNACys Formation in Methanocaldococcus jannaschii: the Mechanism Is Still Unknown
      Benfang Ruan, Hiroaki Nakano, Masashi Tanaka, Jonathan A. Mills, Joseph A. DeVito, Bokkee Min, K. Brooks Low, John R. Battista, Dieter Söll
      Journal of Bacteriology 2004 186 1
    • Diversity of Archaea in Icelandic hot springs based on 16S rRNA and chaperonin genes
      Salvador Mirete, Carolina G. de Figueras, Jose E. González-Pastor
      FEMS Microbiology Ecology 2011 77 1
    • N6-Acetyladenosine: A new modified nucleoside fromMethanopyrus kandleritRNA
      Anselm Sauerwald, Devarasetty Sitaramaiah, James A. McCloskey, Dieter Söll, Pamela F. Crain
      FEBS Letters 2005 579 13
    • Phylogenomic Dating—A Method of Constraining the Age of Microbial Taxa That Lack a Conventional Fossil Record
      Carrine E. Blank
      Astrobiology 2009 9 2
    • ATP Synthases With Novel Rotor Subunits: New Insights into Structure, Function and Evolution of ATPases
      Volker Müller, Astrid Lingl, Kim Lewalter, Michael Fritz
      Journal of Bioenergetics and Biomembranes 2005 37 6
    • Predominant Acidilobus-Like Populations from Geothermal Environments in Yellowstone National Park Exhibit Similar Metabolic Potential in Different Hypoxic Microbial Communities
      Z. J. Jay, D. B. Rusch, S. G. Tringe, C. Bailey, R. M. Jennings, W. P. Inskeep
      Applied and Environmental Microbiology 2014 80 1
    • Progress in Nucleic Acid Research and Molecular Biology Volume 74
      Marie-Claude Serre, Michel Duguet
      2003 74
    • Sequence similarity network reveals the imprints of major diversification events in the evolution of microbial life
      Shu Cheng, Slim Karkar, Eric Bapteste, Nathan Yee, Paul Falkowski, Debashish Bhattacharya
      Frontiers in Ecology and Evolution 2014 2
    • Horizontal Gene Transfer
      Christopher H. House
      2009 532
    • Jizhong Zhou, Dorothea K Thompson
      2004 82
    • Characterization of the methanogen community in a household anaerobic digester fed with swine manure in China
      Huibin Qin, Huihua Lang, Hongjiang Yang
      Applied Microbiology and Biotechnology 2013 97 18
    • Indicators from archaeal secretomes
      Mazen Saleh, Catharine Song, Sabah Nasserulla, L.G. Leduc
      Microbiological Research 2010 165 1
    • An analytical model of gene evolution with six mutation parameters: An application to archaeal circular codes
      Gabriel Frey, Christian J. Michel
      Computational Biology and Chemistry 2006 30 1
    • Characterization of the frhAGB-encoding hydrogenase from a non-methanogenic hyperthermophilic archaeon
      Jeong Ho Jeon, Jae Kyu Lim, Min-Sik Kim, Tae-Jun Yang, Seong-Hyuk Lee, Seung Seob Bae, Yun Jae Kim, Sang Hee Lee, Jung-Hyun Lee, Sung Gyun Kang, Hyun Sook Lee
      Extremophiles 2015 19 1
    • Comparative analysis of predicted gene expression among deep-sea genomes
      Ke Xu, Bin-Guang Ma
      Gene 2007 397 1-2
    • Structural analysis reveals DNA binding properties of Rv2827c, a hypothetical protein from Mycobacterium tuberculosis
      Robert Janowski, Santosh Panjikar, Ali Nasser Eddine, Stefan H. E. Kaufmann, Manfred S. Weiss
      Journal of Structural and Functional Genomics 2009 10 2
    • TM0486 from the Hyperthermophilic Anaerobe Thermotoga maritima is a Thiamin-binding Protein Involved in Response of the Cell to Oxidative Conditions
      Zorah Dermoun, Amélie Foulon, Mitchell D. Miller, Daniel J. Harrington, Ashley M. Deacon, Corinne Sebban-Kreuzer, Philippe Roche, Daniel Lafitte, Olivier Bornet, Ian A. Wilson, Alain Dolla
      Journal of Molecular Biology 2010 400 3
    • Flexibility and communication within the structure of the Mycobacterium smegmatis methionyl-tRNA synthetase
      Henrik Ingvarsson, Torsten Unge
      FEBS Journal 2010 277 19
    • Search for Primitive Methanopyrus Based on Genetic Distance Between Val- and Ile-tRNA Synthetases
      Zhiliang Yu, Ken Takai, Alexei Slesarev, Hong Xue, J. Tze-Fei Wong
      Journal of Molecular Evolution 2009 69 4
    • Thermophiles like hot T
      Ryan Lieph, Felipe A. Veloso, David S. Holmes
      Trends in Microbiology 2006 14 10
    • Functional annotation of operome from Methanothermobacter thermautotrophicus ΔH: An insight to metabolic gap filling
      R. Prathiviraj, P. Chellapandi
      International Journal of Biological Macromolecules 2019 123
    • DNA uracil repair initiated by the archaeal ExoIII homologue Mth212 via direct strand incision
      Lars Schomacher, James P. J. Chong, Paul McDermott, Wilfried Kramer, Hans-Joachim Fritz
      Nucleic Acids Research 2009 37 7
    • A pursuit of lineage-specific and niche-specific proteome features in the world of archaea
      Anindya Roy Chowdhury, Chitra Dutta
      BMC Genomics 2012 13 1
    • Codon choice in genes depends on flanking sequence information—implications for theoretical reverse translation
      Karthikeyan Sivaraman, AswinSaiNarain Seshasayee, Patrick M. Tarwater, Alexander M. Cole
      Nucleic Acids Research 2008 36 3
    • GATC Methylation by Dam methylase in archaea: its roles and possible transcription regulation by an FFRP
      Hideaki KOIKE, Katsushi YOKOYAMA, Tsuyoshi KAWASHIMA, Tomoko YAMASAKI, Shin-ichi MAKINO, Lester CLOWNEY, Masashi SUZUKI
      Proceedings of the Japan Academy, Series B 2005 81 7
    • Thermophilic Lifestyle for an Uncultured Archaeon from Hydrothermal Vents: Evidence from Environmental Genomics
      Hélène Moussard, Ghislaine Henneke, David Moreira, Vincent Jouffe, Purificacion López-García, Christian Jeanthon
      Applied and Environmental Microbiology 2006 72 3
    • Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome
      Lars Juhl Jensen, Marie Skovgaard, Thomas Sicheritz-Pontén, Merete Kjær Jørgensen, Christiane Lundegaard, Corinna Cavan Pedersen, Nanna Petersen, David Ussery
      BMC Genomics 2003 4 1
    • Archaeal DNA uracil repair via direct strand incision: A minimal system reconstituted from purified components
      Lars Schomacher, K. Anke Schürer, Elena Ciirdaeva, Paul McDermott, James P.J. Chong, Wilfried Kramer, Hans-Joachim Fritz
      DNA Repair 2010 9 4
    • Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles
      Zhiliang Yu, Yunting Ma, Weihong Zhong, Juanping Qiu, Jun Li
      Frontiers in Microbiology 2017 8
    • Linking taxonomy with environmental geochemistry and why it matters to the field of geobiology
      C. H. House
      Geobiology 2007 5 1
    • Marine Biotechnology I
      Thomas Schweder, Ulrike Lindequist, Michael Lalk
      2005 96
    • Structural determination of archaeal UDP‐ N ‐acetylglucosamine 4‐epimerase from Methanobrevibacter ruminantium M1 in complex with the bacterial cell wall intermediate UDP‐ N ‐acetylmuramic acid
      Vincenzo Carbone, Linley R. Schofield, Carrie Sang, Andrew J. Sutherland‐Smith, Ron S. Ronimus
      Proteins: Structure, Function, and Bioinformatics 2018 86 12
    • Amino acid variation in cellular processes in 108 bacterial proteomes
      Devarajan Bharanidharan, Namasivayam Gautham
      Archives of Microbiology 2005 184 3
    • Genomic analysis ofOenococcus oeniPSU-1 and its relevance to winemaking
      David A. Mills, Helen Rawsthorne, Courtney Parker, Dafna Tamir, Kira Makarova
      FEMS Microbiology Reviews 2005 29 3
    • Microbial Sulfur Metabolism
      Eric F. Johnson, Biswarup Mukhopadhyay
      2008
    • Modularized Evolution in Archaeal Methanogens Phylogenetic Forest
      Jun Li, Chi-Fat Wong, Mabel Ting Wong, He Huang, Frederick C. Leung
      Genome Biology and Evolution 2014 6 12
    • Biochemical analysis of neomycin-resistance in the methanoarchaeon Methanothermobacter thermautotrophicus and some implications for energetic processes in this strain
      Alan Majernı́k, L’ubomı́ra Čuboňová, Peter Polák, Peter Šmigáň, Miloslav Greksák
      Anaerobe 2003 9 1
    • Favorable and unfavorable amino acid residues in water-soluble and transmembrane proteins
      Hiroshi Nakashima, Ayano Yoshihara, Kei-ichiro Kitamura
      Journal of Biomedical Science and Engineering 2013 06 01
    • Helix–hairpin–helix protein MJ1434 from Methanocaldococcus jannaschii and EndoIV homologue TTC0482 from Thermus thermophilus HB27 do not process DNA uracil residues
      Lars Schomacher, Sabine Smolorz, Elena Ciirdaeva, Svetlana Ber, Wilfried Kramer, Hans-Joachim Fritz
      Nucleic Acids Research 2010 38 15
    • Methane, arsenic, selenium and the origins of the DMSO reductase family
      Michael Wells, Narthana Jeganathar Kanmanii, Al Muatasim Al Zadjali, Jan E. Janecka, Partha Basu, Ronald S. Oremland, John F. Stolz
      Scientific Reports 2020 10 1
    • Optimization of PCR amplification for sensitive capture of Methanopyrus isoleucyl-tRNA synthetase gene in environmental samples
      Zhiliang Yu
      Annals of Microbiology 2010 60 4
    • The RNA-splicing endonuclease from the euryarchaeaon Methanopyrus kandleri is a heterotetramer with constrained substrate specificity
      Ayano Kaneta, Kosuke Fujishima, Wataru Morikazu, Hiroyuki Hori, Akira Hirata
      Nucleic Acids Research 2018 46 4
    • Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking
      Zohar Zafrir, Tamir Tuller
      BMC Bioinformatics 2017 18 1
    • Biogenesis of Hydrocarbons
      Zhe Lyu, Yuchen Liu
      2018
    • CvP-bias as an Index to Predict the Life Style of Last Common Ancestor
      Bin-Guang Ma, Qin Song, Hong-Yu Zhang
      Journal of Biomolecular Structure and Dynamics 2006 23 5
    • Handbook of Hydrocarbon and Lipid Microbiology
      B. Lupa
      2010
    • Lateral variations and vertical structure of the microbial methane cycle in the sediment of Lake Onego (Russia)
      Camille Thomas, Victor Frossard, Marie-Elodie Perga, Natacha Tofield-Pasche, Hilmar Hofmann, Nathalie Dubois, Natalia Belkina, Mariya Zobkova, Serge Robert, Emilie Lyautey
      Inland Waters 2019 9 2
    • The Genetic Code and the Origin of Life
      Jocelyne DiRuggiero, Frank T. Robb
      2004
    • Thermophilic Microbes in Environmental and Industrial Biotechnology
      Takashi Itoh, Takao Iino
      2013
    • Biogenesis of Hydrocarbons
      Zhe Lyu, Yuchen Liu
      2019
    • Conservation of gene co-regulation in prokaryotes and eukaryotes
      Berend Snel, Peer Bork, Martijn A Huynen
      Trends in Biotechnology 2002 20 10
    • Differences in dinucleotide frequencies of thermophilic genes encoding water soluble and membrane proteins
      Hiroshi Nakashima, Yuka Kuroda
      Journal of Zhejiang University SCIENCE B 2011 12 6
    • Evolution of Microbial Pathogens
      Jeffrey G. Lawrence
      2014
    • From Fossils to Astrobiology
      Carrine E. Blank
      2008 12
    • Handbook of Hydrocarbon and Lipid Microbiology
      Y. Liu
      2010
    • Methanothermobacter thermautotrophicus strain ΔH as a potential microorganism for bioconversion of CO2 to methane
      Chellapandi P, Prathiviraj R
      Journal of CO2 Utilization 2020 40
    • Physiology and Biochemistry of Extremophiles
      Antoine Danchin
      2014
    • Tales of the unexpected
      Mohammed Sebaihia, Stephen Bentley, Nicholas Thomson, Matthew Holden, Julian Parkhill
      Trends in Microbiology 2002 10 6
    • The Prokaryotes
      Aharon Oren
      2014
    • A hyperthermophilic methanogen sequenced
      Wim D'Haeze
      Genome Biology 2002 3 7
    • Archaea
      Patrick Forterre, Yvan Zivanovic, Simonetta Gribaldo
      2014
    • Bergey's Manual of Systematics of Archaea and Bacteria
      Nana Shao, Taiwo S. Akinyemi, William B. Whitman, Aharon Oren
      2020
    • Bergey's Manual of Systematics of Archaea and Bacteria
      Nana Shao, Taiwo S. Akinyemi, William B. Whitman, Aharon Oren
      2020
    • Bergey's Manual of Systematics of Archaea and Bacteria
      Nana Shao, Taiwo S. Akinyemi, William B. Whitman, Aharon Oren
      2020
    • Biogenesis of Hydrocarbons
      Zhe Lyu, Yuchen Liu
      2018
    • Current Awareness on Comparative and Functional Genomics
      Comparative and Functional Genomics 2002 3 5
    • Encyclopedia of Industrial Biotechnology
      Steven R. Gray, Michael W.W. Adams, Robert M. Kelly*
      2009
    • Encyclopedia of Molecular Cell Biology and Molecular Medicine
      Madeline E. Rasche, James G. Ferry
      2006
    • Expression, purification and structural analysis of the Pyrococcus abyssi RNA binding protein PAB1135
      Juliana S Luz, João ARG Barbosa, Celso RR Ramos, Carla C Oliveira
      BMC Research Notes 2010 3 1
    • Extremophile Mikroorganismen
      Andreas Stolz
      2017
    • Phylogeny derived from homodimeric endonuclease correlates with its pre-RNA substrates
      Sanga Mitra, Smarajit Das, Satyabrata Sahoo, Chandana Sinha, Jayprokas Chakrabarti
      Advances in Bioscience and Biotechnology 2011 02 03
    • Physiology and Biochemistry of Extremophiles
      Frank T. Robb, Deborah T. Newby
      2014
    • Rotary Ion-Translocating ATPases/ATP Synthases: Diversity, Similarities, and Differences
      V. M. Zubareva, A. S. Lapashina, T. E. Shugaeva, A. V. Litvin, B. A. Feniouk
      Biochemistry (Moscow) 2020 85 12-13
    • Thermophiles for Biotech Industry
      Jujjavarapu Satya Eswari, Swasti Dhagat, Ramkrishna Sen
      2019
    • Роторные ион-транслоцирующие АТФазы/АТФ-синтазы: разнообразие, общие черты и отличия
      В.М. Зубарева, А.С. Лапашина, Т.Е. Шугаева, А.В. Литвин, Б.А. Фенюк
      Биохимия 2020 85 12

    Article usage

    Article usage: March 2002 to January 2021

    AbstractFullPdf
    Mar 2002010
    Apr 2002297372463
    May 200238234181
    Jun 200254327164
    Jul 200224273141
    Aug 200227204122
    Sep 20023521293
    Oct 200232197162
    Nov 2002308374
    Dec 2002176249
    Total 200255419651449
    Jan 2003157864
    Feb 2003368167
    Mar 2003205739
    Apr 2003238355
    May 200376045
    Jun 2003207159
    Jul 2003357259
    Aug 2003235226
    Sep 2003516667
    Oct 20034910083
    Nov 2003398061
    Dec 20035313164
    Total 2003371931689
    Jan 20046511263
    Feb 20047811844
    Mar 200486144111
    Apr 20046512675
    May 20049010150
    Jun 20047510545
    Jul 20046311844
    Aug 20047912742
    Sep 20047811640
    Oct 20046424346
    Nov 20047612164
    Dec 2004788944
    Total 20048971520668
    Jan 2005416230
    Feb 2005417558
    Mar 20055510452
    Apr 2005607237
    May 20054810849
    Jun 2005437231
    Jul 2005374231
    Aug 2005486332
    Sep 2005488935
    Oct 2005588254
    Nov 20057710736
    Dec 20057012061
    Total 2005626996506
    Jan 2006435334
    Feb 2006697744
    Mar 2006647440
    Apr 2006426651
    May 2006436039
    Jun 2006475551
    Jul 2006343913
    Aug 2006333728
    Sep 2006517239
    Oct 2006826535
    Nov 2006747448
    Dec 2006504626
    Total 2006632718448
    Jan 2007386043
    Feb 2007273526
    Mar 2007603839
    Apr 2007405635
    May 2007584638
    Jun 2007353233
    Jul 2007321123
    Aug 2007252930
    Sep 2007454523
    Oct 2007534639
    Nov 2007393936
    Dec 2007345132
    Total 2007486488397
    Jan 2008343325
    Feb 2008332624
    Mar 2008242435
    Apr 2008343049
    May 2008303211
    Jun 2008373919
    Jul 2008681117
    Aug 2008451215
    Sep 2008633836
    Oct 2008293425
    Nov 2008372119
    Dec 2008442216
    Total 2008478322291
    Jan 2009513218
    Feb 2009572431
    Mar 2009343622
    Apr 2009391941
    May 2009513226
    Jun 2009441721
    Jul 2009341924
    Aug 2009212013
    Sep 2009322719
    Oct 2009522045
    Nov 2009452633
    Dec 2009302926
    Total 2009490301319
    Jan 2010403127
    Feb 2010292014
    Mar 2010373727
    Apr 2010413026
    May 2010314832
    Jun 2010353721
    Jul 2010293221
    Aug 2010282620
    Sep 2010315015
    Oct 2010367339
    Nov 2010496855
    Dec 2010204122
    Total 2010406493319
    Jan 2011224622
    Feb 2011115316
    Mar 2011345635
    Apr 2011313622
    May 2011263929
    Jun 2011211823
    Jul 2011222618
    Aug 2011293226
    Sep 2011365129
    Oct 2011695445
    Nov 2011439048
    Dec 2011232418
    Total 2011367525331
    Jan 2012373018
    Feb 2012294736
    Mar 2012363426
    Apr 2012344631
    May 2012313724
    Jun 2012402719
    Jul 2012233117
    Aug 2012172126
    Sep 2012353025
    Oct 2012262830
    Nov 2012283024
    Dec 2012321727
    Total 2012368378303
    Jan 2013322138
    Feb 2013312550
    Mar 2013312227
    Apr 2013552633
    May 2013273025
    Jun 201318722
    Jul 2013341325
    Aug 2013342140
    Sep 2013241834
    Oct 2013393242
    Nov 2013412441
    Dec 2013342135
    Total 2013400260412
    Jan 2014221239
    Feb 2014235129
    Mar 2014465755
    Apr 2014407051
    May 2014314032
    Jun 2014302018
    Jul 2014372915
    Aug 2014444717
    Sep 2014478818
    Oct 2014617316
    Nov 2014326313
    Dec 2014403016
    Total 2014453580319
    Jan 2015543920
    Feb 2015288119
    Mar 2015353831
    Apr 2015232723
    May 2015223316
    Jun 2015292419
    Jul 2015172713
    Aug 2015302113
    Sep 2015365820
    Oct 2015284714
    Nov 2015284415
    Dec 2015252422
    Total 2015355463225
    Jan 2016495123
    Feb 2016325821
    Mar 2016673416
    Apr 2016272710
    May 2016143113
    Jun 2016851310
    Jul 2016462718
    Aug 201634249
    Sep 2016323713
    Oct 20161166510
    Nov 2016545112
    Dec 20161124314
    Total 2016668461169
    Jan 2017659810
    Feb 2017625318
    Mar 2017455313
    Apr 20171207719
    May 2017314015
    Jun 201756197
    Jul 201725426
    Aug 201723375
    Sep 201745596
    Oct 201763448
    Nov 2017705438
    Dec 2017657229
    Total 2017670648174
    Jan 2018558823
    Feb 2018386616
    Mar 20189810132
    Apr 201811711125
    May 201810310428
    Jun 2018645224
    Jul 2018847132
    Aug 2018776641
    Sep 201813210748
    Oct 20184710134
    Nov 20183912948
    Dec 2018559450
    Total 20189091090401
    Jan 2019439946
    Feb 20194211643
    Mar 20193912435
    Apr 20193814733
    May 20193711838
    Jun 2019479555
    Jul 20193810737
    Aug 2019389948
    Sep 2019338432
    Oct 20195111543
    Nov 2019428934
    Dec 20193311543
    Total 20194811308487
    Jan 20205721363
    Feb 20206313959
    Mar 202085137103
    Apr 202091183116
    May 2020165330243
    Jun 202095149130
    Jul 202085174129
    Aug 20206010280
    Sep 202093194107
    Oct 20208120387
    Nov 20206012646
    Dec 20203710137
    Total 202097220511200
    Jan 2021267532
    Total 2021267532
    Total10609155739139
    PreviousNext
    Back to top
    Article Alerts
    Email Article

    Thank you for your interest in spreading the word on PNAS.

    NOTE: We only request your email address so that the person you are recommending the page to knows that you wanted them to see it, and that it is not junk mail. We do not capture any email address.

    Enter multiple addresses on separate lines or separate them with commas.
    The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens
    (Your Name) has sent you a message from PNAS
    (Your Name) thought you would like to see the PNAS web site.
    CAPTCHA
    This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
    Citation Tools
    The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens
    Alexei I. Slesarev, Katja V. Mezhevaya, Kira S. Makarova, Nikolai N. Polushin, Olga V. Shcherbinina, Vera V. Shakhova, Galina I. Belova, L. Aravind, Darren A. Natale, Igor B. Rogozin, Roman L. Tatusov, Yuri I. Wolf, Karl O. Stetter, Andrei G. Malykh, Eugene V. Koonin, Sergei A. Kozyavkin
    Proceedings of the National Academy of Sciences Apr 2002, 99 (7) 4644-4649; DOI: 10.1073/pnas.032671499

    Citation Manager Formats

    • BibTeX
    • Bookends
    • EasyBib
    • EndNote (tagged)
    • EndNote 8 (xml)
    • Medlars
    • Mendeley
    • Papers
    • RefWorks Tagged
    • Ref Manager
    • RIS
    • Zotero
    Request Permissions
    Share
    The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens
    Alexei I. Slesarev, Katja V. Mezhevaya, Kira S. Makarova, Nikolai N. Polushin, Olga V. Shcherbinina, Vera V. Shakhova, Galina I. Belova, L. Aravind, Darren A. Natale, Igor B. Rogozin, Roman L. Tatusov, Yuri I. Wolf, Karl O. Stetter, Andrei G. Malykh, Eugene V. Koonin, Sergei A. Kozyavkin
    Proceedings of the National Academy of Sciences Apr 2002, 99 (7) 4644-4649; DOI: 10.1073/pnas.032671499
    Digg logo Reddit logo Twitter logo Facebook logo Google logo Mendeley logo
    • Tweet Widget
    • Facebook Like
    • Mendeley logo Mendeley
    Proceedings of the National Academy of Sciences: 99 (7)
    Table of Contents

    Submit

    Sign up for Article Alerts

    Jump to section

    • Article
      • Abstract
      • Materials and Methods
      • Results and Discussion
      • Acknowledgments
      • Footnotes
      • Abbreviations
      • References
    • Figures & SI
    • Info & Metrics
    • PDF

    You May Also be Interested in

    Abstract depiction of a guitar and musical note
    Science & Culture: At the nexus of music and medicine, some see disease treatments
    Although the evidence is still limited, a growing body of research suggests music may have beneficial effects for diseases such as Parkinson’s.
    Image credit: Shutterstock/agsandrew.
    Scientist looking at an electronic tablet
    Opinion: Standardizing gene product nomenclature—a call to action
    Biomedical communities and journals need to standardize nomenclature of gene products to enhance accuracy in scientific and public communication.
    Image credit: Shutterstock/greenbutterfly.
    One red and one yellow modeled protein structures
    Journal Club: Study reveals evolutionary origins of fold-switching protein
    Shapeshifting designs could have wide-ranging pharmaceutical and biomedical applications in coming years.
    Image credit: Acacia Dishman/Medical College of Wisconsin.
    White and blue bird
    Hazards of ozone pollution to birds
    Amanda Rodewald, Ivan Rudik, and Catherine Kling talk about the hazards of ozone pollution to birds.
    Listen
    Past PodcastsSubscribe
    Goats standing in a pin
    Transplantation of sperm-producing stem cells
    CRISPR-Cas9 gene editing can improve the effectiveness of spermatogonial stem cell transplantation in mice and livestock, a study finds.
    Image credit: Jon M. Oatley.

    Similar Articles

    Site Logo
    Powered by HighWire
    • Submit Manuscript
    • Twitter
    • Facebook
    • RSS Feeds
    • Email Alerts

    Articles

    • Current Issue
    • Latest Articles
    • Archive

    PNAS Portals

    • Anthropology
    • Chemistry
    • Classics
    • Front Matter
    • Physics
    • Sustainability Science
    • Teaching Resources

    Information

    • Authors
    • Editorial Board
    • Reviewers
    • Librarians
    • Press
    • Site Map
    • PNAS Updates

    Feedback    Privacy/Legal

    Copyright © 2021 National Academy of Sciences. Online ISSN 1091-6490