Better explicating the strengths and shortcomings of these models will help refine projections and improve transparency in the years ahead.
Image credit: Witsawat.S.
Edited* by Howard Reiss, University of California, Los Angeles, CA, and approved August 18, 2014 (received for review November 18, 2013)
Significance
The efficiency of viral replication is limited by the ability of the virus to eject its genome into a cell. We discovered a fundamentally important mechanism for translocation of viral genomes into cells. For the first time, to our knowledge, we show that tightly packaged DNA in the viral capsid of a bacterial virus (phage λ) undergoes a solid-to-fluid–like structural transition that facilitates infection close to 37 °C. Our finding shows a remarkable physical adaptation of bacterial viruses to the environment of Escherichia coli cells in a human host.
Abstract
Releasing the packaged viral DNA into the host cell is an essential process to initiate viral infection. In many double-stranded DNA bacterial viruses and herpesviruses, the tightly packaged genome is hexagonally ordered and stressed in the protein shell, called the capsid. DNA condensed in this state inside viral capsids has been shown to be trapped in a glassy state, with restricted molecular motion in vitro. This limited intracapsid DNA mobility is caused by the sliding friction between closely packaged DNA strands, as a result of the repulsive interactions between the negative charges on the DNA helices. It had been unclear how this rigid crystalline structure of the viral genome rapidly ejects from the capsid, reaching rates of 60,000 bp/s. Through a combination of single-molecule and bulk techniques, we determined how the structure and energy of the encapsidated DNA in phage λ regulates the mobility required for its ejection. Our data show that packaged λ-DNA undergoes a solid-to-fluid–like disordering transition as a function of temperature, resulting locally in less densely packed DNA, reducing DNA–DNA repulsions. This process leads to a significant increase in genome mobility or fluidity, which facilitates genome release at temperatures close to that of viral infection (37 °C), suggesting a remarkable physical adaptation of bacterial viruses to the environment of Escherichia coli cells in a human host.
Footnotes
↵1T.L., U.S.-U., and D.L. contributed equally to this work.
- ↵2To whom correspondence should be addressed. Email: alexe{at}cmu.edu.
Author contributions: T.L., U.S.-U., D.L., B.J., and A.E. designed research; T.L., U.S.-U., D.L., G.C.L., D.R., and A.E. performed research; T.L., U.S.-U., D.L., G.C.L., X.Z., B.J., D.R., I.S., and A.E. contributed new reagents/analytic tools; T.L., U.S.-U., D.L., G.C.L., X.Z., B.J., D.R., I.S., and A.E. analyzed data; and T.L., U.S.-U., and A.E. wrote the paper.
The authors declare no conflict of interest.
↵*This Direct Submission article had a prearranged editor.
This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1321637111/-/DCSupplemental.
Mobility transition of packaged phage DNA
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