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Research Article

Spatial and temporal dynamics of superspreading events in the 2014–2015 West Africa Ebola epidemic

Max S. Y. Lau, Benjamin Douglas Dalziel, Sebastian Funk, Amanda McClelland, Amanda Tiffany, Steven Riley, C. Jessica E. Metcalf, and Bryan T. Grenfell
  1. aDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544;
  2. bDepartment of Integrative Biology, Oregon State University, Corvallis, OR 97331;
  3. cDepartment of Mathematics, Oregon State University, Corvallis, OR 97331;
  4. dCentre for the Mathematical Modelling of Infectious Diseases, London School of Hygiene and Tropical Medicine, London WC1E 7HT, United Kingdom;
  5. eInternational Federation of Red Cross and Red Crescent Societies, CH-1211 Geneva 19, Switzerland;
  6. fEpicentre, CH-1211 Geneva 6, Switzerland;
  7. gMedical Research Council Centre for Outbreak Analysis and Modelling, Department Infectious Disease Epidemiology, Imperial College London, London SW7 2AZ, United Kingdom;
  8. hFogarty International Center, National Institutes of Health, Bethesda, MD 20892

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PNAS first published February 13, 2017; https://doi.org/10.1073/pnas.1614595114
Max S. Y. Lau
aDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544;
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  • For correspondence: msylau@princeton.edu
Benjamin Douglas Dalziel
bDepartment of Integrative Biology, Oregon State University, Corvallis, OR 97331;
cDepartment of Mathematics, Oregon State University, Corvallis, OR 97331;
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Sebastian Funk
dCentre for the Mathematical Modelling of Infectious Diseases, London School of Hygiene and Tropical Medicine, London WC1E 7HT, United Kingdom;
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Amanda McClelland
eInternational Federation of Red Cross and Red Crescent Societies, CH-1211 Geneva 19, Switzerland;
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Amanda Tiffany
fEpicentre, CH-1211 Geneva 6, Switzerland;
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Steven Riley
gMedical Research Council Centre for Outbreak Analysis and Modelling, Department Infectious Disease Epidemiology, Imperial College London, London SW7 2AZ, United Kingdom;
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C. Jessica E. Metcalf
aDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544;
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Bryan T. Grenfell
aDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544;
hFogarty International Center, National Institutes of Health, Bethesda, MD 20892
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  1. Edited by David Cox, Nuffield College, Oxford, United Kingdom, and approved January 5, 2017 (received for review September 8, 2016)

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Significance

For many infections, some infected individuals transmit to disproportionately more susceptibles than others, a phenomenon referred to as “superspreading.” Understanding superspreading can facilitate devising individually targeted control measures, which may outperform population-level measures. Superspreading has been described for a recent Ebola virus (EBOV) outbreak, but systematic characterizations of its spatiotemporal dynamics are still lacking. We introduce a statistical framework that allows us to identify core characteristics of EBOV superspreading. We find that the epidemic was largely driven and sustained by superspreadings that are ubiquitous throughout the outbreak and that age is an important demographic predictor for superspreading. Our results highlight the importance of control measures targeted at potential superspreaders and enhance understanding of causes and consequences of superspreading for EBOV.

Abstract

The unprecedented scale of the Ebola outbreak in Western Africa (2014–2015) has prompted an explosion of efforts to understand the transmission dynamics of the virus and to analyze the performance of possible containment strategies. Models have focused primarily on the reproductive numbers of the disease that represent the average number of secondary infections produced by a random infectious individual. However, these population-level estimates may conflate important systematic variation in the number of cases generated by infected individuals, particularly found in spatially localized transmission and superspreading events. Although superspreading features prominently in first-hand narratives of Ebola transmission, its dynamics have not been systematically characterized, hindering refinements of future epidemic predictions and explorations of targeted interventions. We used Bayesian model inference to integrate individual-level spatial information with other epidemiological data of community-based (undetected within clinical-care systems) cases and to explicitly infer distribution of the cases generated by each infected individual. Our results show that superspreaders play a key role in sustaining onward transmission of the epidemic, and they are responsible for a significant proportion (∼61%) of the infections. Our results also suggest age as a key demographic predictor for superspreading. We also show that community-based cases may have progressed more rapidly than those notified within clinical-care systems, and most transmission events occurred in a relatively short distance (with median value of 2.51 km). Our results stress the importance of characterizing superspreading of Ebola, enhance our current understanding of its spatiotemporal dynamics, and highlight the potential importance of targeted control measures.

  • Ebola
  • superspreading
  • offspring distribution
  • Bayesian inference

Footnotes

  • ↵1To whom correspondence should be addressed. Email: msylau{at}princeton.edu.
  • Author contributions: M.S.Y.L. designed research; M.S.Y.L., B.D.D., and B.T.G. performed research; M.S.Y.L. analyzed data; and M.S.Y.L., B.D.D., S.F., A.M., A.T., S.R., C.J.E.M., and B.T.G. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1614595114/-/DCSupplemental.

Freely available online through the PNAS open access option.

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Superspreading of Ebola virus in West Africa
Max S. Y. Lau, Benjamin Douglas Dalziel, Sebastian Funk, Amanda McClelland, Amanda Tiffany, Steven Riley, C. Jessica E. Metcalf, Bryan T. Grenfell
Proceedings of the National Academy of Sciences Feb 2017, 201614595; DOI: 10.1073/pnas.1614595114

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Superspreading of Ebola virus in West Africa
Max S. Y. Lau, Benjamin Douglas Dalziel, Sebastian Funk, Amanda McClelland, Amanda Tiffany, Steven Riley, C. Jessica E. Metcalf, Bryan T. Grenfell
Proceedings of the National Academy of Sciences Feb 2017, 201614595; DOI: 10.1073/pnas.1614595114
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