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Research Article

Conserved gene regulatory module specifies lateral neural borders across bilaterians

Yongbin Li, Di Zhao, Takeo Horie, Geng Chen, Hongcun Bao, Siyu Chen, Weihong Liu, Ryoko Horie, Tao Liang, Biyu Dong, Qianqian Feng, Qinghua Tao, and View ORCID ProfileXiao Liu
PNAS first published July 17, 2017; https://doi.org/10.1073/pnas.1704194114
Yongbin Li
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Di Zhao
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Takeo Horie
bShimoda Marine Research Center, University of Tsukuba, Shimoda, Shizuoka 415-0025, Japan;
cLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544;
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Geng Chen
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Hongcun Bao
dCollege of Life Sciences, Zhejiang University, Hangzhou 310058, China;
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Siyu Chen
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Weihong Liu
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Ryoko Horie
cLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544;
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Tao Liang
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Biyu Dong
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Qianqian Feng
eCenter of Biomedical Analysis Platform, Tsinghua University, Beijing 100084, China
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Qinghua Tao
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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Xiao Liu
aMinistry of Education Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China;
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  • ORCID record for Xiao Liu
  • For correspondence: xiaoliu@mail.tsinghua.edu.cn
  1. Edited by Michael S. Levine, Princeton University, Princeton, NJ, and approved June 21, 2017 (received for review March 13, 2017)

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Significance

The lateral neural plate border (NPB) gives rise to the neural crest, one of the precursors of the peripheral nervous system (PNS) and generally considered an evolutionary innovation of the vertebrate lineage. Recently, it has been reported that a rudimentary neural crest exists in protovertebrate Ciona, but whether this is true in other invertebrates and there is conserved molecular machinery specifying the NPB lineage are unknown. We present evidence that orthologs of the NPB specification module specify lateral neural progenitor cells in several invertebrates, including worm, fly, and tunicate. We propose that an ancient lateral neuroblast gene regulatory module was coopted by chordates during the evolution of PNS progenitors.

Abstract

The lateral neural plate border (NPB), the neural part of the vertebrate neural border, is composed of central nervous system (CNS) progenitors and peripheral nervous system (PNS) progenitors. In invertebrates, PNS progenitors are also juxtaposed to the lateral boundary of the CNS. Whether there are conserved molecular mechanisms determining vertebrate and invertebrate lateral neural borders remains unclear. Using single-cell-resolution gene-expression profiling and genetic analysis, we present evidence that orthologs of the NPB specification module specify the invertebrate lateral neural border, which is composed of CNS and PNS progenitors. First, like in vertebrates, the conserved neuroectoderm lateral border specifier Msx/vab-15 specifies lateral neuroblasts in Caenorhabditis elegans. Second, orthologs of the vertebrate NPB specification module (Msx/vab-15, Pax3/7/pax-3, and Zic/ref-2) are significantly enriched in worm lateral neuroblasts. In addition, like in other bilaterians, the expression domain of Msx/vab-15 is more lateral than those of Pax3/7/pax-3 and Zic/ref-2 in C. elegans. Third, we show that Msx/vab-15 regulates the development of mechanosensory neurons derived from lateral neural progenitors in multiple invertebrate species, including C. elegans, Drosophila melanogaster, and Ciona intestinalis. We also identify a novel lateral neural border specifier, ZNF703/tlp-1, which functions synergistically with Msx/vab-15 in both C. elegans and Xenopus laevis. These data suggest a common origin of the molecular mechanism specifying lateral neural borders across bilaterians.

  • C. elegans
  • neural plate border
  • neural border
  • Msx/vab-15
  • ZNF703/tlp-1

Footnotes

  • ↵1Y.L., D.Z., T.H., and G.C. contributed equally to this work.

  • ↵2To whom correspondence should be addressed. Email: xiaoliu{at}mail.tsinghua.edu.cn.
  • Author contributions: Y.L., D.Z., T.H., and G.C. designed research; S.C., W.L., R.H., and B.D. performed research; H.B., T.L., and Q.F. analyzed data; and Q.T. and X.L. wrote the paper.

  • The authors declare no conflict of interest.

  • This article is a PNAS Direct Submission.

  • This article contains supporting information online at www.pnas.org/lookup/suppl/doi:10.1073/pnas.1704194114/-/DCSupplemental.

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Conserved regulatory module of neural borders
Yongbin Li, Di Zhao, Takeo Horie, Geng Chen, Hongcun Bao, Siyu Chen, Weihong Liu, Ryoko Horie, Tao Liang, Biyu Dong, Qianqian Feng, Qinghua Tao, Xiao Liu
Proceedings of the National Academy of Sciences Jul 2017, 201704194; DOI: 10.1073/pnas.1704194114

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Conserved regulatory module of neural borders
Yongbin Li, Di Zhao, Takeo Horie, Geng Chen, Hongcun Bao, Siyu Chen, Weihong Liu, Ryoko Horie, Tao Liang, Biyu Dong, Qianqian Feng, Qinghua Tao, Xiao Liu
Proceedings of the National Academy of Sciences Jul 2017, 201704194; DOI: 10.1073/pnas.1704194114
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