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The human gene damage index as a gene-level approach to prioritizing exome variants

Yuval Itan, Lei Shang, Bertrand Boisson, Etienne Patin, Alexandre Bolze, Marcela Moncada-Vélez, Eric Scott, Michael J. Ciancanelli, Fabien G. Lafaille, Janet G. Markle, Ruben Martinez-Barricarte, Sarah Jill de Jong, Xiao-Fei Kong, Patrick Nitschke, Aziz Belkadi, Jacinta Bustamante, Anne Puel, Stéphanie Boisson-Dupuis, Peter D. Stenson, Joseph G. Gleeson, David N. Cooper, Lluis Quintana-Murci, Jean-Michel Claverie, Shen-Ying Zhang, Laurent Abel, and Jean-Laurent Casanova
PNAS published ahead of print October 19, 2015 https://doi.org/10.1073/pnas.1518646112
Yuval Itan
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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  • For correspondence: yitan@rockefeller.educasanova@rockefeller.edu
Lei Shang
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Bertrand Boisson
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Etienne Patin
bHuman Evolutionary Genetics Unit, Institut Pasteur, 75015 Paris, France;cCentre National de la Recherche Scientifique, CNRS URA 3012, Paris, France;
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Alexandre Bolze
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Marcela Moncada-Vélez
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;dGroup of Primary Immunodeficiencies, Faculty of Medicine, University of Antioquia UdeA, Medellín, Colombia;
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Eric Scott
eNeurogenetics Laboratory, Department of Neurosciences, University of California, San Diego, CA 92093-0662;
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Michael J. Ciancanelli
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Fabien G. Lafaille
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Janet G. Markle
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Ruben Martinez-Barricarte
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Sarah Jill de Jong
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Xiao-Fei Kong
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;
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Patrick Nitschke
fBioinformatics Platform, University Paris Descartes, 75015 Paris, France;
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Aziz Belkadi
gLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France;hParis Descartes University, Imagine Institute, 75015 Paris, France;
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Jacinta Bustamante
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;gLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France;hParis Descartes University, Imagine Institute, 75015 Paris, France;iCenter for Study of Primary Immunodeficiencies, Necker Hospital for Sick Children, Paris, France;
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Anne Puel
gLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France;hParis Descartes University, Imagine Institute, 75015 Paris, France;
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Stéphanie Boisson-Dupuis
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;gLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France;hParis Descartes University, Imagine Institute, 75015 Paris, France;
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Peter D. Stenson
jInstitute of Medical Genetics, Cardiff University, Cardiff CF14 4XN, United Kingdom;
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Joseph G. Gleeson
kLaboratory of Pediatric Brain Disease, The Rockefeller University, New York, NY 10065;lNew York Genome Center, New York, NY 10013;mHoward Hughes Medical Institute, New York, NY 10065;
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David N. Cooper
jInstitute of Medical Genetics, Cardiff University, Cardiff CF14 4XN, United Kingdom;
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Lluis Quintana-Murci
bHuman Evolutionary Genetics Unit, Institut Pasteur, 75015 Paris, France;cCentre National de la Recherche Scientifique, CNRS URA 3012, Paris, France;
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Jean-Michel Claverie
nAPHM & Structural and Genomic Information Laboratory, UMR7256, CNRS Aix-Marseille University, 13288 Marseille, France;
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Shen-Ying Zhang
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;gLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France;hParis Descartes University, Imagine Institute, 75015 Paris, France;
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Laurent Abel
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;gLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France;hParis Descartes University, Imagine Institute, 75015 Paris, France;
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Jean-Laurent Casanova
aSt. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY 10065;gLaboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U.1163, Necker Hospital for Sick Children, 75015 Paris, France;hParis Descartes University, Imagine Institute, 75015 Paris, France;mHoward Hughes Medical Institute, New York, NY 10065;oPediatric Hematology-Immunology Unit, Necker Hospital for Sick Children, 75015 Paris, France
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  • For correspondence: yitan@rockefeller.educasanova@rockefeller.edu

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  • Download Dataset_S01 (XLSX)

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