Table 3. Gene Ontology (GO) assignment to putative transcripts
Common to vascular plants Absent in vascular plants
No. of putative transcripts 9,907 300
No. of corresponding genes in the nr data set 6,773 244
No. of genes with GO assigned 2,946 116
Metabolism, % 77.7 68.0
Transport, % 13.2 19.8
Signal transduction, % 2.7 4.7
Cell organization and biogenesis, % 1.3 1.7
Cell cycle, % 1.1 0.9
Photosynthesis, % 1.0 0.9
Response to external stimulus, % 0.8 1.1
Response to stress, % 0.5 0.3
Cell growth and/or maintenance, % 0.4 1.7
Cell death, % 0.4 0.0
Others, % 0.8 0.9
  • nr, nonredundant