Table 1. Classification of variants by type and context
Insertion/deletion
Microsatellite
SNP
Context bp No. of variants Rate/kb SE No. of variants Rate/kb SE No. of variants Rate/kb SE
3′ UTR 6,767 2 0.296 0.209 1 0.148 0.148 10 1.478 0.467
5′ UTR 783 0 0 0 0 0 0 4 5.109 2.548
CNS 42,795 4 0.093 0.047 7 0.164 0.062 91 2.126 0.223
Coding 9,291 0 0 0 0 0 0 9 0.969 0.323
Intron 144,046 40 0.278 0.044 78 0.541 0.061 337 2.34 0.127
Promoter 5,618 0 0 0 12 2.136 0.616 19 3.382 0.775
Nonconserved 373,203 91 0.244 0.026 160 0.429 0.034 855 2.291 0.078
Unsequenced prediction 4,202,906 1,025 0.244 1,811 0.431 12,230 2.291
  • Shown is the length of high-quality sequence in each strain, the number of variants per kilobase, and the SE of the rate. The bottom row gives the predicted variants in the remaining sequence.