Table 1.

List of top 50 most highly enriched motifs

IDk-mer sequenceNo. of allowed mismatchesNo. of initial sites in CNEsFold enrichmentZ-scoreKnown motif
LM1 GTTGCCATGGAAAC 169825.9130.0X-box
LM2 ACCACTAGATGGCA 130522.980.4
LM3 GTTGCTAGGCAACC 120430.776.9
LM4 GCCTGCTGGGAGTTGTAGTT 314326.359.2
LM5 AACTCCCATTAGCGTTAATGG 34368.153.5
LM6 AAAGGCCCTTTTAAGGGCCAC 34846.246.3Histone 3′-UTR
LM7 CAGCAGATGGCGCTGTT 29722.144.4
LM8 ATGAATTATTCATG 12808.844.3
LM9 TCAGCACCACGGACAG 18225.644.2NRSE
LM10 CTGTTTCCTTGGAAACCAG 31659.335.2
LM11 GAAATGCTGACAGACCCTTAA 34130.734.5
LM12 TGGCCTGAAAGAGTTAATGCA 35122.832.7
LM13 TGCTAATTAGCA 08213.130.4CHX10
LM14 ATCCAGATGTTTGGCA 13327.028.9RP58
LM15 CATTTGCATGCAAATGA 21248.528.8
LM16 TTGAGATCCTTAGATGAAAG 36414.628.6
LM17 CATCTGGTTTGCAT 11178.828.5
LM18 CATTTGCATCTGATTTGCAT 38011.828.2
LM19 TGCTAATTAGCAGC 18810.828.1
LM20 TGACAGCTGTCAAA 11188.528.0
LM21 ATTTGCATCTCATTTGC 21238.227.9
LM22 CAGCTGTTAAACAGCTG 28011.427.6
LM23 AGCACCACCTGGTGGTA 26513.427.5
LM24 AGAACAGATGGC 07012.126.8TAL1BETAITF2
LM25 AAAAGCAATTTCCT 12025.326.7
LM26 TAAACACAGCTG 08310.226.3
LM27 CATTTGCATCTCATTAGCA 31108.026.1
LM28 AGAACATCTGTTTC 11446.325.5
LM29 GCTAATTGCAAATG 1988.425.3
LM30 CTTTGAAATGTCAA 11825.325.3
LM31 CTTTTCATCTTCAAAGCACTT 35713.025.2
LM32 CTGACATTTCCAAA 11745.425.0
LM33 GTAATTGGAAACAGCTG 26910.724.8
LM34 GATTTGCATTGCAAATG 2848.824.1
LM35 ACTTCAAAGGGAGC 1878.524.1
LM36 GAAATGCAATTTGC 11256.424.1
LM37 ATGCAAATGAGCCC 1858.523.9
LM38 GCAAATTAGCAGCT 1828.523.4
LM39 GTCTCCTAGGAAAC 1848.423.4
LM40 TCCCATTGACTTCAATGGGA 34414.223.4
LM41 TTTGAAATGCTAATG 1808.623.2
LM42 AAGCCTAATTAGCA 1699.623.1
LM43 CAGGAAATGAAA 01415.623.1
LM44 GTGTAATTGGAAACAGCTG 3758.923.0
LM45 GCTAATTGGATTTG 1768.722.9
LM46 AACAGCTGTTGAAA 11285.922.9
LM47 AGAGTGCCACCTACTGAAT 3659.822.7
LM48 TAATGAGCTCATTA 11086.522.6
LM49 GTAATTAGCAGCTG 1689.322.5
LM50 TGGGTAATTACATTCTG 2659.622.5