Table 1

Sites of urine collection and JCV isolates of which IG regions were identified by sequencing

Geographic region Isolates
City, CountryAbbreviation
Europe
 London, United KingdomUKUK-1, -2, -4 to -6
 Barcelona, SpainSPSP-1 to -5
 Rome, ItalyITIT-1 to -5
 Deventer, NetherlandsNN1 to N7
 Illertissen, GermanyGG1 to G5
 Stockholm, SwedenSWSW-1 to -4, -7, -8
 Prague, Czech RepublicCRCR-1 to -7
 Budapest, HungaryHUHU-1 to -5
 Novosibirsk, RussiaRSRS-1 to -5
 Athens, GreeceGRGR-1 to -16
Africa
 Fes/Ifrane, MoroccoMRMR-1 to -8
 Nouakchott, MauritaniaMAMA-1, -2a*, -2b*, -3 to -7
 Accra, GhanaGHGH-1 to 4
 Bangui, Central AfricaCACA-1 to -11
 Khartoum, SudanSUSU-1 to -5
 Tessaoua, NigerNGNG-1 to -5
 Welkom, South AfricaSOSO-1 to -6
 Lusaka, ZambiaZAZA-1 to -5
 Nairobi, KenyaKEKE-1 to -8
 Addis Ababa, EthiopiaETET-1 to -8
 Port Louis, MauritiusMUMU-1, -3 to -9
Asia
 Ankara, TurkeyTUTU-1 to -15
 Riyadh, Saudi ArabiaSASA-1 to -14
 Varanasi, IndiaININ-1 to -12
 Colombo, Sri LankaSLSL-1 to -5
 Ulaanbaatar, MongoliaMOMO-1 to -12
 Yangon, MyanmarMNMN-1 to -15
 Chiang Mai, ThailandTLTL-1 to -11
 Masai, MalaysiaMLML-1 to -14
 Jakarta, IndonesiaIDID-1 to -17
 Pamalican Is., PhilippinesPHPH-1 to -8
 Harbin, ChinaHBHB-1 to -6
 Shenyang/Jinzhou, ChinaSJSJ-1 to -7
 Beijing, ChinaCBCB-1 to -10
 Wuhan, ChinaCWCW-1 to -8, -10, -11
 Chengdu, ChinaCDCD-1 to -10
 Guangzhou, ChinaGZGZ-1 to -13
 Taipei, ChinaTPC1 to C9
 Seoul, South KoreaSKSK-1 to -14
 Okinawa, JapanONON-1 to -11
 Ishikawa, JapanIKC-04 to -08, M-05 to -10
 Tokyo, JapanTYC-11 to -20, M-11 to -14
  • * Obtained from the same urinary DNA sample. 

  • Reported sequences (6, 11, 12, 14).