Table 1

Strains used in DNA:DNA microarray hybridization analysis

BacteriumCulture collectionStrain originSSU rRNA accession no.gyrB accession no.
S. oneidensis MR-1ATCC 700550 TSLake Oneida, NY, sediments AF005251 AF005694
S. oneidensis DLM7Lower Green Bay sediments, Lake Michigan, Michigan AF387347 * AF005697
S. oneidenisis MR-4Black Sea water column AF005252 AF005695
Shewanella sp. CL 256/73NCTC 12093Human cerebrospinal fluid AF387346 * AF378351 *
S. putrefaciens str. 95ATCC 8071 TSButter U91550 AF005669
S. baltica str. 63NCTC 10735, TSOil brine, Japan AJ000214 AF387353 *
Shewanella sp. str. 184ATCC 8073Butter AF387349 * AF387354 *
S. woodyi MS32ATCC 51908, TSPersian Gulf seawater AF003548 AF014944
Environmental isolate W3 18-1Pacific Ocean marine sediments (630 m, 5–6 cm in core) AF387350 * AF387355 *
Environmental isolate PV-4Pacific Ocean seawater, Naha Vents, Hawaii AF387348 * AF387352 *
E. coli K-12ATCC 10798Human feces AE000452 AE000447
  • Type strains (TS) indicated.  

  • * , accession nos. for sequences determined in this study.