Table 3.

Selected pathways from the Kyoto Encyclopedia of Genes and Genomes database with different expression ratios (transcripts⋅gene−1) between microenvironments for Synechococcus sp. CB0205, Pelagibacter sp. HTCC7211, and Gammaproteobacterium HTCC2080

PathwayDescriptionCB0205HTCC7211HTCC2080
ko00010Glycolysis/gluconeogenesisFLPAPA
ko00030Pentose phosphate pathwayFLPA
ko00051Fructose, mannose metabolismFLPA
ko00071Fatty acid metabolismPAPA
ko00190Oxidative phosphorylationFLPAPA
ko00195PhotosynthesisFL
ko00196Photosynthesis–antennaFL
ko00230Purine metabolismFLPAPA
ko00240Pyrimidine metabolismFLPAPA
ko00253Tetracycline biosynthesisFLPA
ko00260Glycine, serine, threonine metabolismPA
ko00280Val, leu, isoleu degradationFLPAPA
ko00310Lysine degradationFL
ko00330Arginine, proline metabolismFLPAPA
ko00340Histidine metabolismFLPA
ko00360Phenylalanine metabolismPA
ko00380Tryptophan metabolismFL
ko00430Taurine metabolismPA
ko00480Glutathione metabolismFLPAPA
ko00500Starch, sucrose metabolismFLFL
ko00521Streptomycin biosynthesisFL
ko00523Polyketide biosynthesisFL
ko00620Pyruvate metabolismFLPAPA
ko00630Glyoxylate, dicarboxylate metabolismFLPAPA
ko00640Propanoate metabolismPA
ko00650Butanoate metabolismFLPA
ko00670One carbon pool by folateFLPA
ko00710Carbon fixationFL
ko00730Thiamine metabolismFL
ko00740Riboflavin metabolismFL
ko00760Nicotinate metabolismFLPAPA
ko00770Pantothenate, CoA biosynthesisFLPA
ko00780Biotin metabolismFL
ko00790Folate biosynthesisFLPA
ko00860Porphyrin, chlorophyll metabolismFLPAPA
ko00910Nitrogen metabolismFLPAPA
ko00920Sulfur metabolismFLPA
ko01053Biosynthesis siderophore NRPsPA
ko01055Biosyntheis VancomycinFL
ko02020Two-component systemsFLPAPA
ko02040Flagellar assemblyFL
ko03030DNA replicationFLPAPA
ko03060Protein exportFLPA
ko03430Mismatch repairFLPAPA
ko03440Homologous recombinationFLPAPA
  • FL, greater in FL cells; PA, greater in PA cells.