Table S1.

Probes used in this study

Probe nameTarget taxonProbe sequence 5′–3′Source
DomainPhylumClassFamilyGenusSpecies
Eub338BacteriaGCTGCCTCCCGTAGGAGT44
Actinobacteria
 Act381ActinobacteriaCGTCGCTGCATCAGGCTTThis paper
 Act692ActinobacteriaCTGATATCTGCGCATTCCThis paper
 Act476ActinomycesATCCAGCTACCGTCAACC45
 Cor595CorynebacteriumCCGGAATTTCACAGACGACGThis paper
 Cor633CorynebacteriumAGTTATGCCCGTATCGCCTGThis paper
 Rot491RothiaTAGCCGGCGCTTTCTCTG16
 Cmat175Corynebacterium matruchotiiACTAAACCATGGTCCTATCCGThis paper
Bacteroidetes
 CFB286BacteroidetesTCCTCTCAGAACCCCTAC46
 CFB563BacteroidetesGGACCCTTTAAACCCAAT46
 Cap371CapnocytophagaTCAGTCTTCCGACCATTG15
 Prv392PrevotellaGCACGCTACTTGGCTGG32
 Pg1160PorphyromonasCCTCACGCCTTACGACGG16
Firmicutes
 LGC354AFirmicutesTGGAAGATTCCCTACTGC47
 LGC354CFirmicutesCCGAAGATTCCCTACTGC47
 Str405StreptococcusTAGCCGTCCCTTTCTGGT48
 Gem572GemellaTAAACCACCTGCGCGCGCTT16
 Vei488VeillonellaCCGTGGCTTTCTATTCCG49
 Sel60SelenomonasTCATTCGCTCCGTTCGAC16
Proteobacteria
 Bet42Aβ-ProteobacteriaGCCTTCCCACTTCGTTT50
 Lmir444Lautropia mirabilisTGGCACAGTCCTTTTCGTTCCThis paper
 Nei1030NeisseriaceaeCCTGTGTTACGGCTCCCG16
 Gam42Aγ-ProteobacteriaGCCTTCCCACATCGTTT50
 Pas111PasteurellaceaeTCCCAAGCATTACTCACC16
 Cam1021CampylobacterATTTCTGCAAGCAGACACTC16
Fusobacteria
 Fus714FusobacteriumGGCTTCCCCATCGGCATT16
 Lep568LeptotrichiaGCCTAGATGCCCTTTATG16
Spirochaetes
 Trp684TreponemaTCTACAGATTCCACCCCTAC16
TM7
 TM7550TM7CCCAGTCACTCCGGATAAThis paper
  • Probes are listed by phylum; the probe name, target taxon, and probe sequence are shown.