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ChIP-seq

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Transcription factor profiling reveals molecular choreography and key regulators of human retrotransposon expression
Xiaoji Sun, Xuya Wang, Zuojian Tang, Mark Grivainis, David Kahler, Chi Yun, Paolo Mita, David Fenyö, and Jef D. Boeke

PNAS June 12, 2018 115 (24) E5526-E5535; published ahead of print May 25, 2018. https://doi.org/10.1073/pnas.1722565115
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Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development
Gregory A. Cary, Alys M. Cheatle Jarvela, Rene D. Francolini, and Veronica F. Hinman

PNAS June 6, 2017 114 (23) 5854-5861; published ahead of print June 6, 2017. https://doi.org/10.1073/pnas.1610611114
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Estrogen receptor α wields treatment-specific enhancers between morphologically similar endometrial tumors
Marjolein Droog, Ekaterina Nevedomskaya, Gwen M. Dackus, Renske Fles, Yongsoo Kim, Harry Hollema, Marian J. Mourits, Petra M. Nederlof, Hester H. van Boven, Sabine C. Linn, Flora E. van Leeuwen, Lodewyk F. A. Wessels, and Wilbert Zwart

PNAS February 21, 2017 114 (8) E1316-E1325; published ahead of print February 6, 2017. https://doi.org/10.1073/pnas.1615233114
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Histone arginine methylation in cocaine action in the nucleus accumbens
Diane M. Damez-Werno, HaoSheng Sun, Kimberly N. Scobie, Ningyi Shao, Jaclyn Rabkin, Caroline Dias, Erin S. Calipari, Ian Maze, Catherine J. Pena, Deena M. Walker, Michael E. Cahill, Ramesh Chandra, Amy Gancarz, Ezekiell Mouzon, Joseph A. Landry, Hannah Cates, Mary-Kay Lobo, David Dietz, C. David Allis, Ernesto Guccione, Gustavo Turecki, Paola Defilippi, Rachael L. Neve, Yasmin L. Hurd, Li Shen, and Eric J. Nestler

PNAS August 23, 2016 113 (34) 9623-9628; published ahead of print August 9, 2016. https://doi.org/10.1073/pnas.1605045113
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Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells
Claudia Cattoglio, Elisa T. Zhang, Ivan Grubisic, Kunitoshi Chiba, Yick W. Fong, and Robert Tjian

PNAS May 5, 2015 112 (18) E2317-E2326; published ahead of print April 21, 2015. https://doi.org/10.1073/pnas.1505569112
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CHD8 regulates neurodevelopmental pathways associated with autism spectrum disorder in neural progenitors
Aarathi Sugathan, Marta Biagioli, Christelle Golzio, Serkan Erdin, Ian Blumenthal, Poornima Manavalan, Ashok Ragavendran, Harrison Brand, Diane Lucente, Judith Miles, Steven D. Sheridan, Alexei Stortchevoi, Manolis Kellis, Stephen J. Haggarty, Nicholas Katsanis, James F. Gusella, and Michael E. Talkowski

PNAS October 21, 2014 111 (42) E4468-E4477; published ahead of print October 7, 2014. https://doi.org/10.1073/pnas.1405266111
Open Access
Transcriptional response to stress in the dynamic chromatin environment of cycling and mitotic cells
Anniina Vihervaara, Christian Sergelius, Jenni Vasara, Malin A. H. Blom, Alexandra N. Elsing, Pia Roos-Mattjus, and Lea Sistonen

PNAS September 3, 2013 110 (36) E3388-E3397; https://doi.org/10.1073/pnas.1305275110
Open Access
Antitumor activity of a pyrrole-imidazole polyamide
Fei Yang, Nicholas G. Nickols, Benjamin C. Li, Georgi K. Marinov, Jonathan W. Said, and Peter B. Dervan

PNAS January 29, 2013 110 (5) 1863-1868; https://doi.org/10.1073/pnas.1222035110
Open Access
Transcriptional repressor PRR5 directly regulates clock-output pathways
Norihito Nakamichi, Takatoshi Kiba, Mari Kamioka, Takamasa Suzuki, Takafumi Yamashino, Tetsuya Higashiyama, Hitoshi Sakakibara, and Takeshi Mizuno

PNAS October 16, 2012 109 (42) 17123-17128; https://doi.org/10.1073/pnas.1205156109

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