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computational biology

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Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis
Yu Zhang, C. Jake Harris, Qikun Liu, Wanlu Liu, Israel Ausin, Yanping Long, Lidan Xiao, Li Feng, Xu Chen, Yubin Xie, Xinyuan Chen, Lingyu Zhan, Suhua Feng, Jingyi Jessica Li, Haifeng Wang, Jixian Zhai, and Steven E. Jacobsen

PNAS January 30, 2018 115 (5) E1069-E1074; published ahead of print January 16, 2018. https://doi.org/10.1073/pnas.1716300115
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Robust mechanobiological behavior emerges in heterogeneous myosin systems
Paul F. Egan, Jeffrey R. Moore, Allen J. Ehrlicher, David A. Weitz, Christian Schunn, Jonathan Cagan, and Philip LeDuc

PNAS September 26, 2017 114 (39) E8147-E8154; published ahead of print September 12, 2017. https://doi.org/10.1073/pnas.1713219114
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Identification of amino acid networks governing catalysis in the closed complex of class I terpene synthases
Patrick Schrepfer, Alexander Buettner, Christian Goerner, Michael Hertel, Jeaphianne van Rijn, Frank Wallrapp, Wolfgang Eisenreich, Volker Sieber, Robert Kourist, and Thomas Brück

PNAS February 23, 2016 113 (8) E958-E967; published ahead of print February 3, 2016. https://doi.org/10.1073/pnas.1519680113
Open Access
Choosing experiments to accelerate collective discovery
Andrey Rzhetsky, Jacob G. Foster, Ian T. Foster, and James A. Evans

PNAS November 24, 2015 112 (47) 14569-14574; published ahead of print November 9, 2015. https://doi.org/10.1073/pnas.1509757112
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Simulating the function of sodium/proton antiporters
Raphael Alhadeff and Arieh Warshel

PNAS October 6, 2015 112 (40) 12378-12383; published ahead of print September 21, 2015. https://doi.org/10.1073/pnas.1516881112
Open Access
Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo
Sergio Branciamore, Andrei S. Rodin, Arthur D. Riggs, and Sergei N. Rodin

PNAS April 29, 2014 111 (17) 6353-6358; published ahead of print April 14, 2014. https://doi.org/10.1073/pnas.1402585111
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Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis
Senthilkumar Cinghu, Sailu Yellaboina, Johannes M. Freudenberg, Swati Ghosh, Xiaofeng Zheng, Andrew J. Oldfield, Brad L. Lackford, Dmitri V. Zaykin, Guang Hu, and Raja Jothi

PNAS April 22, 2014 111 (16) E1581-E1590; published ahead of print April 7, 2014. https://doi.org/10.1073/pnas.1318598111
Open Access
Identifying and mapping cell-type-specific chromatin programming of gene expression
Troels T. Marstrand and John D. Storey

PNAS February 11, 2014 111 (6) E645-E654; https://doi.org/10.1073/pnas.1312523111
Open Access
Implementation of cell-free biological networks at steady state
Henrike Niederholtmeyer, Viktoria Stepanova, and Sebastian J. Maerkl

PNAS October 1, 2013 110 (40) 15985-15990; https://doi.org/10.1073/pnas.1311166110
Open Access
Experimentally calibrated population of models predicts and explains intersubject variability in cardiac cellular electrophysiology
Oliver J. Britton, Alfonso Bueno-Orovio, Karel Van Ammel, Hua Rong Lu, Rob Towart, David J. Gallacher, and Blanca Rodriguez

PNAS June 4, 2013 110 (23) E2098-E2105; https://doi.org/10.1073/pnas.1304382110

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