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computational biology

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Robust landscapes of ribosome dwell times and aminoacyl-tRNAs in response to nutrient stress in liver
Cédric Gobet, Benjamin Dieter Weger, Julien Marquis, Eva Martin, Nagammal Neelagandan, Frédéric Gachon, and Felix Naef

PNAS April 28, 2020 117 (17) 9630-9641; first published April 15, 2020. https://doi.org/10.1073/pnas.1918145117
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On the evolution of protein–adenine binding
Aya Narunsky, Amit Kessel, Ron Solan, Vikram Alva, Rachel Kolodny, and Nir Ben-Tal

PNAS March 3, 2020 117 (9) 4701-4709; first published February 20, 2020. https://doi.org/10.1073/pnas.1911349117
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Structural and dynamical rationale for fatty acid unsaturation in Escherichia coli
Greg J. Dodge, Ashay Patel, Kara L. Jaremko, J. Andrew McCammon, Janet L. Smith, and Michael D. Burkart

PNAS April 2, 2019 116 (14) 6775-6783; first published March 14, 2019. https://doi.org/10.1073/pnas.1818686116
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Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis
Yu Zhang, C. Jake Harris, Qikun Liu, Wanlu Liu, Israel Ausin, Yanping Long, Lidan Xiao, Li Feng, Xu Chen, Yubin Xie, Xinyuan Chen, Lingyu Zhan, Suhua Feng, Jingyi Jessica Li, Haifeng Wang, Jixian Zhai, and Steven E. Jacobsen

PNAS January 30, 2018 115 (5) E1069-E1074; first published January 16, 2018. https://doi.org/10.1073/pnas.1716300115
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Robust mechanobiological behavior emerges in heterogeneous myosin systems
Paul F. Egan, Jeffrey R. Moore, Allen J. Ehrlicher, David A. Weitz, Christian Schunn, Jonathan Cagan, and Philip LeDuc

PNAS September 26, 2017 114 (39) E8147-E8154; first published September 12, 2017. https://doi.org/10.1073/pnas.1713219114
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Identification of amino acid networks governing catalysis in the closed complex of class I terpene synthases
Patrick Schrepfer, Alexander Buettner, Christian Goerner, Michael Hertel, Jeaphianne van Rijn, Frank Wallrapp, Wolfgang Eisenreich, Volker Sieber, Robert Kourist, and Thomas Brück

PNAS February 23, 2016 113 (8) E958-E967; first published February 3, 2016. https://doi.org/10.1073/pnas.1519680113
Open Access
Choosing experiments to accelerate collective discovery
Andrey Rzhetsky, Jacob G. Foster, Ian T. Foster, and James A. Evans

PNAS November 24, 2015 112 (47) 14569-14574; first published November 9, 2015. https://doi.org/10.1073/pnas.1509757112
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Simulating the function of sodium/proton antiporters
Raphael Alhadeff and Arieh Warshel

PNAS October 6, 2015 112 (40) 12378-12383; first published September 21, 2015. https://doi.org/10.1073/pnas.1516881112
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Enhanced evolution by stochastically variable modification of epigenetic marks in the early embryo
Sergio Branciamore, Andrei S. Rodin, Arthur D. Riggs, and Sergei N. Rodin

PNAS April 29, 2014 111 (17) 6353-6358; first published April 14, 2014. https://doi.org/10.1073/pnas.1402585111
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Integrative framework for identification of key cell identity genes uncovers determinants of ES cell identity and homeostasis
Senthilkumar Cinghu, Sailu Yellaboina, Johannes M. Freudenberg, Swati Ghosh, Xiaofeng Zheng, Andrew J. Oldfield, Brad L. Lackford, Dmitri V. Zaykin, Guang Hu, and Raja Jothi

PNAS April 22, 2014 111 (16) E1581-E1590; first published April 7, 2014. https://doi.org/10.1073/pnas.1318598111

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