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gene expression

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Successful immunotherapy induces previously unidentified allergen-specific CD4+ T-cell subsets
John F. Ryan, Rachel Hovde, Jacob Glanville, Shu-Chen Lyu, Xuhuai Ji, Sheena Gupta, Robert J. Tibshirani, David C. Jay, Scott D. Boyd, R. Sharon Chinthrajah, Mark M. Davis, Stephen J. Galli, Holden T. Maecker, and Kari C. Nadeau

PNAS March 1, 2016 113 (9) E1286-E1295; first published January 25, 2016. https://doi.org/10.1073/pnas.1520180113
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Assessment of fight outcome is needed to activate socially driven transcriptional changes in the zebrafish brain
Rui F. Oliveira, José M. Simões, Magda C. Teles, Catarina R. Oliveira, Jorg D. Becker, and João S. Lopes

PNAS February 2, 2016 113 (5) E654-E661; first published January 19, 2016. https://doi.org/10.1073/pnas.1514292113
Open Access
Mechanistic insights into c-di-GMP–dependent control of the biofilm regulator FleQ from Pseudomonas aeruginosa
Bruno Y. Matsuyama, Petya V. Krasteva, Claudine Baraquet, Caroline S. Harwood, Holger Sondermann, and Marcos V. A. S. Navarro

PNAS January 12, 2016 113 (2) E209-E218; first published December 28, 2015. https://doi.org/10.1073/pnas.1523148113
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Effects of aging on circadian patterns of gene expression in the human prefrontal cortex
Cho-Yi Chen, Ryan W. Logan, Tianzhou Ma, David A. Lewis, George C. Tseng, Etienne Sibille, and Colleen A. McClung

PNAS January 5, 2016 113 (1) 206-211; first published December 22, 2015. https://doi.org/10.1073/pnas.1508249112
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Association mapping reveals the role of purifying selection in the maintenance of genomic variation in gene expression
Emily B. Josephs, Young Wha Lee, John R. Stinchcombe, and Stephen I. Wright

PNAS December 15, 2015 112 (50) 15390-15395; first published November 24, 2015. https://doi.org/10.1073/pnas.1503027112
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Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression
Jie Zhang, Yuan Liu, En-Hua Xia, Qiu-Yang Yao, Xiang-Dong Liu, and Li-Zhi Gao

PNAS December 15, 2015 112 (50) E7022-E7029; first published November 30, 2015. https://doi.org/10.1073/pnas.1515170112
Open Access
CG gene body DNA methylation changes and evolution of duplicated genes in cassava
Haifeng Wang, Getu Beyene, Jixian Zhai, Suhua Feng, Noah Fahlgren, Nigel J. Taylor, Rebecca Bart, James C. Carrington, Steven E. Jacobsen, and Israel Ausin

PNAS November 3, 2015 112 (44) 13729-13734; first published October 19, 2015. https://doi.org/10.1073/pnas.1519067112
Open Access
Rapid Y degeneration and dosage compensation in plant sex chromosomes
Alexander S. T. Papadopulos, Michael Chester, Kate Ridout, and Dmitry A. Filatov

PNAS October 20, 2015 112 (42) 13021-13026; first published October 5, 2015. https://doi.org/10.1073/pnas.1508454112
Open Access
Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays
Antti Honkela, Jaakko Peltonen, Hande Topa, Iryna Charapitsa, Filomena Matarese, Korbinian Grote, Hendrik G. Stunnenberg, George Reid, Neil D. Lawrence, and Magnus Rattray

PNAS October 20, 2015 112 (42) 13115-13120; first published October 5, 2015. https://doi.org/10.1073/pnas.1420404112
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Targeting protein translation, RNA splicing, and degradation by morpholino-based conjugates in Plasmodium falciparum
Aprajita Garg, Donna Wesolowski, Dulce Alonso, Kirk W. Deitsch, Choukri Ben Mamoun, and Sidney Altman

PNAS September 22, 2015 112 (38) 11935-11940; first published September 8, 2015. https://doi.org/10.1073/pnas.1515864112

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