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high-throughput sequencing

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Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins
Mikhail V. Pogorelyy, Anastasia A. Minervina, Maximilian Puelma Touzel, Anastasiia L. Sycheva, Ekaterina A. Komech, Elena I. Kovalenko, Galina G. Karganova, Evgeniy S. Egorov, Alexander Yu. Komkov, Dmitriy M. Chudakov, Ilgar Z. Mamedov, Thierry Mora, Aleksandra M. Walczak, and Yuri B. Lebedev

PNAS December 11, 2018 115 (50) 12704-12709; first published November 20, 2018. https://doi.org/10.1073/pnas.1809642115
Open Access
Ancient DNA reveals the Arctic origin of Viking Age cod from Haithabu, Germany
Bastiaan Star, Sanne Boessenkool, Agata T. Gondek, Elena A. Nikulina, Anne Karin Hufthammer, Christophe Pampoulie, Halvor Knutsen, Carl André, Heidi M. Nistelberger, Jan Dierking, Christoph Petereit, Dirk Heinrich, Kjetill S. Jakobsen, Nils Chr. Stenseth, Sissel Jentoft, and James H. Barrett

PNAS August 22, 2017 114 (34) 9152-9157; first published August 7, 2017. https://doi.org/10.1073/pnas.1710186114
Open Access
Identification of shared TCR sequences from T cells in human breast cancer using emulsion RT-PCR
- From the Cover
Daniel J. Munson, Colt A. Egelston, Kami E. Chiotti, Zuly E. Parra, Tullia C. Bruno, Brandon L. Moore, Taizo A. Nakano, Diana L. Simons, Grecia Jimenez, John H. Yim, Dmitri V. Rozanov, Michael T. Falta, Andrew P. Fontenot, Paul R. Reynolds, Sonia M. Leach, Virginia F. Borges, John W. Kappler, Paul T. Spellman, Peter P. Lee, and Jill E. Slansky

PNAS July 19, 2016 113 (29) 8272-8277; first published June 15, 2016. https://doi.org/10.1073/pnas.1606994113
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Shared antigens in cancer immunotherapy
- Jul 07, 2016
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Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires
Brandon J. DeKosky, Oana I. Lungu, Daechan Park, Erik L. Johnson, Wissam Charab, Constantine Chrysostomou, Daisuke Kuroda, Andrew D. Ellington, Gregory C. Ippolito, Jeffrey J. Gray, and George Georgiou

PNAS May 10, 2016 113 (19) E2636-E2645; first published April 25, 2016. https://doi.org/10.1073/pnas.1525510113
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Massively parallel enzyme kinetics reveals the substrate recognition landscape of the metalloprotease ADAMTS13
Colin A. Kretz, Manhong Dai, Onuralp Soylemez, Andrew Yee, Karl C. Desch, David Siemieniak, Kärt Tomberg, Fyodor A. Kondrashov, Fan Meng, and David Ginsburg

PNAS July 28, 2015 112 (30) 9328-9333; first published July 13, 2015. https://doi.org/10.1073/pnas.1511328112
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Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping
Ji Qi, Yamao Chen, Gregory P. Copenhaver, and Hong Ma

PNAS July 8, 2014 111 (27) 10007-10012; first published June 23, 2014. https://doi.org/10.1073/pnas.1321897111
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Multiplexed DNA repair assays for multiple lesions and multiple doses via transcription inhibition and transcriptional mutagenesis
Zachary D. Nagel, Carrie M. Margulies, Isaac A. Chaim, Siobhan K. McRee, Patrizia Mazzucato, Anwaar Ahmad, Ryan P. Abo, Vincent L. Butty, Anthony L. Forget, and Leona D. Samson

PNAS May 6, 2014 111 (18) E1823-E1832; first published April 22, 2014. https://doi.org/10.1073/pnas.1401182111
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Functional genomic screen of human stem cell differentiation reveals pathways involved in neurodevelopment and neurodegeneration
Ying Zhang, Vincent P. Schulz, Brian D. Reed, Zheng Wang, Xinghua Pan, Jessica Mariani, Ghia Euskirchen, Michael P. Snyder, Flora M. Vaccarino, Natalia Ivanova, Sherman M. Weissman, and Anna M. Szekely

PNAS July 23, 2013 110 (30) 12361-12366; https://doi.org/10.1073/pnas.1309725110
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Characterization and comparison of human nuclear and cytosolic editomes
Liang Chen

PNAS July 16, 2013 110 (29) E2741-E2747; https://doi.org/10.1073/pnas.1218884110

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